View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_high_48 (Length: 222)
Name: NF15823_high_48
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 9193921 - 9194123
Alignment:
| Q |
1 |
gcttctcttcctatactttattacctatgaaagatttcattatctcaccatcttcatcttctcatgaaaacccttcatcacaaacaccaacccttcaaca |
100 |
Q |
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| T |
9193921 |
gcttctcttcctatactttattacctatgaaagatttcattatctcaccatcttcatcttctcatgaaaacccttcatcacaaacaccaacccttcaaca |
9194020 |
T |
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| Q |
101 |
aaagcttcaatttctactccaaatccaatccgaaaattggatctatgccattatgtggcaaacaacaaaagatgaaaaaggtaaacctttcttatcttgg |
200 |
Q |
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| T |
9194021 |
aaagcttcaatttctactccaaatccaatccgaaaattggatctatggcattttgtggcaaacaacaaaagatgaaaaaggtaaacctttcttatcttgg |
9194120 |
T |
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| Q |
201 |
ggt |
203 |
Q |
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||| |
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| T |
9194121 |
ggt |
9194123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 9214073 - 9213934
Alignment:
| Q |
64 |
atgaaaacccttcatcacaaacaccaacccttcaacaaaagcttcaatttctactccaaatccaatccgaaaattggatctatgccattatgtggcaaac |
163 |
Q |
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|||||||||||||| ||||||| | ||||||||||||||| |||||||||||| |||||| |||||||||||||||| ||||||| ||| | |||||||| |
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| T |
9214073 |
atgaaaacccttcaccacaaaccctaacccttcaacaaaaacttcaatttctagtccaaacccaatccgaaaattgggtctatgctattttatggcaaac |
9213974 |
T |
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| Q |
164 |
aacaaaagatgaaaaaggtaaacctttcttatcttggggt |
203 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
9213973 |
aacaaaagatgaaaaaggtaaacctctcttatcttggggt |
9213934 |
T |
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