View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15823_high_49 (Length: 212)

Name: NF15823_high_49
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15823_high_49
NF15823_high_49
[»] chr7 (1 HSPs)
chr7 (16-195)||(3643329-3643508)
[»] chr3 (2 HSPs)
chr3 (15-194)||(16351341-16351520)
chr3 (15-192)||(11991603-11991780)
[»] scaffold0019 (2 HSPs)
scaffold0019 (15-192)||(125654-125831)
scaffold0019 (31-139)||(123853-123960)
[»] scaffold0014 (4 HSPs)
scaffold0014 (15-190)||(140551-140726)
scaffold0014 (19-149)||(104312-104442)
scaffold0014 (19-149)||(137669-137799)
scaffold0014 (49-160)||(121043-121154)
[»] scaffold0051 (1 HSPs)
scaffold0051 (15-140)||(47486-47611)
[»] chr1 (1 HSPs)
chr1 (15-136)||(41316551-41316672)
[»] scaffold0654 (1 HSPs)
scaffold0654 (59-151)||(792-884)
[»] chr6 (6 HSPs)
chr6 (49-151)||(15714564-15714666)
chr6 (97-163)||(29898446-29898512)
chr6 (97-151)||(24263324-24263378)
chr6 (97-151)||(29867022-29867076)
chr6 (106-151)||(29365993-29366038)
chr6 (30-138)||(29894859-29894967)
[»] scaffold0308 (1 HSPs)
scaffold0308 (91-192)||(9362-9463)
[»] scaffold0086 (1 HSPs)
scaffold0086 (111-160)||(30881-30930)
[»] chr5 (1 HSPs)
chr5 (15-140)||(33497892-33498017)
[»] scaffold0652 (1 HSPs)
scaffold0652 (49-151)||(867-969)
[»] scaffold0177 (1 HSPs)
scaffold0177 (62-151)||(27691-27780)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 3643329 - 3643508
Alignment:
Q  16 atgaagcagaggtcttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatga 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||    
T  3643329 atgaagcagaggtcttgttgtccaaaatggagaacaatggtatcattcctgatgctgtaacgtatgaaactatcatccgggctctctttcgtaaagatga 3643428  T
Q  116 gaacgaaaaggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatgatctt 195  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3643429 gaacgaaaaggcggagaaacttcttcgtgaaatgatcattagaggcctcctattatgcaaacactaggtaagatgatctt 3643508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 16351341 - 16351520
Alignment:
Q  15 gatgaagcagaggtcttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatg 114  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |    
T  16351341 gatgaagcagaggtcttgttgtcaaaaatggaggacaatggtatcattcctgatgctgtaacttatgaaactatcatccaggctctctttcataaagacg 16351440  T
Q  115 agaacgaaaaggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatgatct 194  Q
    |||||||||||||  ||||||||||| |||||||| |||||| ||| ||||||||||| |||||||||||||||||||||    
T  16351441 agaacgaaaaggcacagaaacttcttcgtgaaatggtcattaaaggtctcctataatggaaacactaggtaagatgatct 16351520  T

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Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 11991603 - 11991780
Alignment:
Q  15 gatgaagcagaggtcttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatg 114  Q
    ||||||||||||| ||||||||| |||||| |  ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  11991603 gatgaagcagaggccttgttgtcaaaaatggatgacaatggtatcattcctgatgctgtaacttatgaaactctcatccaggctctctttcataaagatg 11991702  T
Q  115 agaacgaaaaggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatgat 192  Q
    |||| ||||||||||||||||||||  ||||||||||   |||||| ||||||| ||| |||||||||||||||||||    
T  11991703 agaatgaaaaggcggagaaacttctgcgtgaaatgattgctagaggtctcctatgatggaaacactaggtaagatgat 11991780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 125831 - 125654
Alignment:
Q  15 gatgaagcagaggtcttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatg 114  Q
    |||||||| ||||||||| |||| |||||| |  ||||||| || |||||||||| |||||| |||||||||||||||| |||| |||||||||||||||    
T  125831 gatgaagcggaggtcttgctgtcaaaaatggaagacaatggcataattcctgatgctgtaacttatgaaactatcatccgggctttctttcataaagatg 125732  T
Q  115 agaacgaaaaggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatgat 192  Q
    |||| ||||||||||||||||||||| ||||||||||   |||||| || ||  |||| |||||||||||||||||||    
T  125731 agaatgaaaaggcggagaaacttcttcgtgaaatgattgctagaggtctacttaaatggaaacactaggtaagatgat 125654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 123960 - 123853
Alignment:
Q  31 tgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatgagaacgaaaaggcgga 130  Q
    ||||||| |||||| |  ||||||||  ||||||| |||| ||||| || ||||| || ||||| ||||| ||| | || |||||||||||||| || ||    
T  123960 tgttgtcaaaaatggaagacaatggttgcattcctaatgtagtaacttaagaaacaattatccacgctctttttaaaaatgatgagaacgaaaa-gcaga 123862  T
Q  131 gaaacttct 139  Q
    |||||||||    
T  123861 gaaacttct 123853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 84; Significance: 4e-40; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 140551 - 140726
Alignment:
Q  15 gatgaagcagaggtcttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatg 114  Q
    ||||||| ||| | |||| |||| |||||| |  ||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||    
T  140551 gatgaagtagatgccttgatgtctaaaatggatgacaatggtatcattcctgatgctgtaacttatgtaactatcatccgggctctctttcataaagatg 140650  T
Q  115 agaacgaaaaggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatg 190  Q
    |||| ||| ||||||||||||||||| ||||||||||   |||||| || |||||||| | ||||||||| |||||    
T  140651 agaatgaacaggcggagaaacttcttcgtgaaatgattgctagaggtctactataatggagacactaggtgagatg 140726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 104442 - 104312
Alignment:
Q  19 aagcagaggtcttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatgagaa 118  Q
    ||||||||| ||||||||| |||||||||   |||| | |||||||||||| |||||| ||||||||||| |||||  |||||||| |||||||||||||    
T  104442 aagcagaggccttgttgtcaaaaatgaagggtaatgatgtcattcctgatgctgtaacttatgaaactattatccactctctcttttataaagatgagaa 104343  T
Q  119 cgaaaaggcggagaaacttctttgtgaaatg 149  Q
     ||||| ||||||||||||||| ||||||||    
T  104342 tgaaaaagcggagaaacttcttcgtgaaatg 104312  T

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Target: scaffold0014; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 137669 - 137799
Alignment:
Q  19 aagcagaggtcttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatgagaa 118  Q
    ||||||||| ||||||||| |||||| || | |||| ||||| |||| |||||||||| ||||||||||| ||||   |||||||| |||||||| | ||    
T  137669 aagcagaggccttgttgtcaaaaatggaggataatgatatcaatcctaatgttgtaacttatgaaactattatccgctctctcttttataaagattacaa 137768  T
Q  119 cgaaaaggcggagaaacttctttgtgaaatg 149  Q
     ||||||||||||||||||||| ||||||||    
T  137769 tgaaaaggcggagaaacttcttcgtgaaatg 137799  T

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Target: scaffold0014; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 121154 - 121043
Alignment:
Q  49 acaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatgagaacgaaaaggcggagaaacttctttgtgaaat 148  Q
    ||||||||  || ||||||||||||||| ||||||||||| ||  | ||||| ||| | || |||||||| || ||||| |||||||||||  |||||||    
T  121154 acaatggttgcactcctgatgttgtaacttatgaaactattatttacgctctttttaaaaatgatgagaatgataaggcagagaaacttctacgtgaaat 121055  T
Q  149 gatcattagagg 160  Q
    ||| | ||||||    
T  121054 gattactagagg 121043  T

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Target: scaffold0051 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 47611 - 47486
Alignment:
Q  15 gatgaagcagaggtcttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatg 114  Q
    |||||||  |||| ||||||||| |||||| || ||||||||||  ||||| ||| |||||| ||||||||||| |||| ||||||||||||||||||      
T  47611 gatgaagtggaggccttgttgtcaaaaatggaggacaatggtatacttcctaatgctgtaacttatgaaactattatccgggctctctttcataaagact 47512  T
Q  115 agaacgaaaaggcggagaaacttctt 140  Q
     ||| |||||||| ||||||||||||    
T  47511 tgaatgaaaaggcagagaaacttctt 47486  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 41316551 - 41316672
Alignment:
Q  15 gatgaagcagaggtcttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatg 114  Q
    |||||||||||||  |||||||| |||||| |  || ||||||||||||||||||  ||||| ||||||||||  || |  || |||||||||||||| |    
T  41316551 gatgaagcagaggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacg 41316650  T
Q  115 agaacgaaaaggcggagaaact 136  Q
    |||| |||||||| ||||||||    
T  41316651 agaatgaaaaggcagagaaact 41316672  T

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Target: scaffold0654 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 884 - 792
Alignment:
Q  59 cattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatgagaacgaaaaggcggagaaacttctttgtgaaatgat 151  Q
    |||||||||||||||||||||||||||||| || |  ||||| ||| | || |||||||| || | ||| |||||||||||  ||||||||||    
T  884 cattcctgatgttgtaacgtatgaaactattattcgcgctctttttaaaaatgatgagaatgatagggcagagaaacttctacgtgaaatgat 792  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 15714666 - 15714564
Alignment:
Q  49 acaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatgagaacgaaaaggcggagaaacttctttgtgaaat 148  Q
    ||||||||  |||||| |||| |||||| |||||||| || ||||  ||||||||| | || |||||||| || ||||| |||||||||||  |||||||    
T  15714666 acaatggttgcattccagatgctgtaacttatgaaacaattatccgtgctctctttaaaaatgatgagaatgataaggcagagaaacttctgcgtgaaat 15714567  T
Q  149 gat 151  Q
    |||    
T  15714566 gat 15714564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 29898446 - 29898512
Alignment:
Q  97 ctctctttcataaagatgagaacgaaaaggcggagaaacttctttgtgaaatgatcattagaggcct 163  Q
    |||| ||| |||||||||| || || |||||||||||||||||| |||||||||| || ||||||||    
T  29898446 ctctgtttgataaagatgaaaatgataaggcggagaaacttcttcgtgaaatgattatgagaggcct 29898512  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 24263378 - 24263324
Alignment:
Q  97 ctctctttcataaagatgagaacgaaaaggcggagaaacttctttgtgaaatgat 151  Q
    |||| ||| |||||||||| || || |||||||||||||||||| ||||||||||    
T  24263378 ctctgtttgataaagatgaaaatgataaggcggagaaacttcttcgtgaaatgat 24263324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 29867022 - 29867076
Alignment:
Q  97 ctctctttcataaagatgagaacgaaaaggcggagaaacttctttgtgaaatgat 151  Q
    |||| ||| |||||||||| || || |||||||||||||||||| ||||||||||    
T  29867022 ctctgtttgataaagatgaaaatgataaggcggagaaacttcttcgtgaaatgat 29867076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 29366038 - 29365993
Alignment:
Q  106 ataaagatgagaacgaaaaggcggagaaacttctttgtgaaatgat 151  Q
    |||||||||| || || |||||||||||||||||| ||||||||||    
T  29366038 ataaagatgaaaatgataaggcggagaaacttcttcgtgaaatgat 29365993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 29894859 - 29894967
Alignment:
Q  30 ttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatgagaacgaaaaggcgg 129  Q
    |||||||| ||||||||  ||||| ||  |||||| |||| |||||| |||||||  |||||||   | || ||| |||||||||| || || |||||||    
T  29894859 ttgttgtcaaaaatgaaagacaatagttgcattccagatgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcgg 29894958  T
Q  130 agaaacttc 138  Q
    |||||||||    
T  29894959 agaaacttc 29894967  T

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Target: scaffold0308 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 9362 - 9463
Alignment:
Q  91 tccaggctctctttcataaagatgagaacgaaaaggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatg 190  Q
    |||| ||||||||| | || ||||||||||||||||| |||||||||||  ||||||||||   |||||| || |||||| | ||  ||||| |||||||    
T  9362 tccacgctctctttaaaaatgatgagaacgaaaaggcagagaaacttctacgtgaaatgattgctagaggtctactataaggaaagtactagttaagatg 9461  T
Q  191 at 192  Q
    ||    
T  9462 at 9463  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 30930 - 30881
Alignment:
Q  111 gatgagaacgaaaaggcggagaaacttctttgtgaaatgatcattagagg 160  Q
    |||||||| ||||||||||||||||||||| ||||||||||  |||||||    
T  30930 gatgagaatgaaaaggcggagaaacttcttcgtgaaatgattgttagagg 30881  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 33498017 - 33497892
Alignment:
Q  15 gatgaagcagaggtcttgttgtccaaaatgaagaacaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatg 114  Q
    ||||||| |||||  | |||||| |||||  || |||||| |||||||||| |   |||||| ||||||| | | |||| | ||||||||||||||||||    
T  33498017 gatgaagtagaggattagttgtcaaaaatagaggacaatgctatcattccttagagtgtaacttatgaaattgttatccggtctctctttcataaagatg 33497918  T
Q  115 agaacgaaaaggcggagaaacttctt 140  Q
    |||| || ||| | ||||||||||||    
T  33497917 agaatgagaagacagagaaacttctt 33497892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 969 - 867
Alignment:
Q  49 acaatggtatcattcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatgagaacgaaaaggcggagaaacttctttgtgaaat 148  Q
    ||||||||  ||||||  ||| |||||| |||| ||| || ||||| ||||||||| | || |||||||| || ||||| |||||||||||  |||||||    
T  969 acaatggttgcattccaaatgctgtaacttatgcaacaattatccatgctctctttaaaaatgatgagaatgataaggcagagaaacttctacgtgaaat 870  T
Q  149 gat 151  Q
    |||    
T  869 gat 867  T

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Target: scaffold0177 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 27691 - 27780
Alignment:
Q  62 tcctgatgttgtaacgtatgaaactatcatccaggctctctttcataaagatgagaacgaaaaggcggagaaacttctttgtgaaatgat 151  Q
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T  27691 tcctgatgttgtaacttatgaaactattattcgcgctctttttaaaaatgatgagaaccataaagcagagaaacttctacgtgaaatgat 27780  T

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