View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_high_7 (Length: 557)
Name: NF15823_high_7
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 42 - 294
Target Start/End: Original strand, 52624083 - 52624326
Alignment:
| Q |
42 |
tgatatttcaaactaactgctcatcaaaatagacactgagctaaatgccagttaattgtctaatttaaaggattaaaattgtaaacaggaaaaatggcaa |
141 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52624083 |
tgatttttcaaactaactgctcatcaaaatagacactgagctaaatgccagttaattgtctaatttaaaggattaaaattgtaaacaggaaagatggcaa |
52624182 |
T |
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| Q |
142 |
acttccaaagaaatggacaatgcaaacaaacagctgcttgtatgtggataagacaacaaaatcagacgggtggtcgggatcacgggcgctgcactgagac |
241 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52624183 |
acttccaaagaaatggacactggaaacaaacagctgcttgtatgtggataagacaacaaaatcagacgggtggtcgggatcacgggcgctgcactgagac |
52624282 |
T |
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| Q |
242 |
atgtcatgtcatctccccttccccccaaaaaggccccacgtctcttagatcaa |
294 |
Q |
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| T |
52624283 |
atgtcatgtcatct---------cccaaaaaggccccacgtctcttagatcaa |
52624326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 103 - 294
Target Start/End: Original strand, 52616573 - 52616760
Alignment:
| Q |
103 |
aatttaaaggattaaaattgtaaacaggaaaaatggcaaacttccaaagaaatggacaatgcaaacaaacagctgcttgtatgtggataagacaacaaaa |
202 |
Q |
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| T |
52616573 |
aatttaaaggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactg----gaaacagctgcttgtatgtggataagacaacaaaa |
52616668 |
T |
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| Q |
203 |
tcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgtcatctccccttccccccaaaaaggccccacgtctcttagatcaa |
294 |
Q |
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| T |
52616669 |
tcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgtcatctccccttccccccaaaaaggccccacgtctcttagatcaa |
52616760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 368 - 545
Target Start/End: Complemental strand, 54809993 - 54809808
Alignment:
| Q |
368 |
aaggataagaaaagtgaagcaattgaataatc--------gaatatggagataacaaacatgtcccaagctctgcaacttcacgctcaattcataaaatc |
459 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54809993 |
aaggataagaaaagtgaagcaattgaatcatctttgagtagaatatggagataacaaacatgtcccaagctcttcaacttcacgctcaattcataaaatc |
54809894 |
T |
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| Q |
460 |
acaaaaccaacgaaacttctcaaagctcttcactttcgttgctcaatcaccttccggcgacctcaactacgctcgtcttcatctca |
545 |
Q |
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| T |
54809893 |
acaaaaccaacgaaacttctcaaagctcttcactttcgctgctcaatctccttccggcgacctcaactacgctcgtcttcttctca |
54809808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 52616808 - 52616861
Alignment:
| Q |
292 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaacta |
345 |
Q |
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| T |
52616808 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaacta |
52616861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 52624374 - 52624427
Alignment:
| Q |
292 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaacta |
345 |
Q |
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| T |
52624374 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaacta |
52624427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 52602572 - 52602604
Alignment:
| Q |
18 |
cttttttccatcataatcctcacgtgatatttc |
50 |
Q |
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| T |
52602572 |
cttttttccatcataatcctcacgtgatatttc |
52602604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 52623323 - 52623355
Alignment:
| Q |
18 |
cttttttccatcataatcctcacgtgatatttc |
50 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
52623323 |
cttttttccatcataatcctcacgtgatatttc |
52623355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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