View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_1 (Length: 759)
Name: NF15823_low_1
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 711; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 1 - 751
Target Start/End: Original strand, 46238463 - 46239213
Alignment:
| Q |
1 |
cggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238463 |
cggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctg |
46238562 |
T |
|
| Q |
101 |
atgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaac |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238563 |
atgtaagttgtctattatgtgaatccctttactttcctctgtttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaac |
46238662 |
T |
|
| Q |
201 |
gaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctattgtggtatgtggggtct |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238663 |
gaggaaaaggaggaaaacgttaaagatgttgtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctattgtggtatgtggggtct |
46238762 |
T |
|
| Q |
301 |
gtgtgtggggtcgtttaagacacgtgtcttaatgttattggtccaattttatgtgtgcaggacaacaccaagtttaactgcatttttcaccatgggggag |
400 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46238763 |
gtgtgtggggtcgttaaagacacgtgtcttaatgttattggtccaattttttgagtgcaggacaacaccaagttcaactgcatttttcaccatgggggag |
46238862 |
T |
|
| Q |
401 |
agtttgtcagggaagaaaccatattctacagaggtggggttcaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaact |
500 |
Q |
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| T |
46238863 |
agtttgtcagggaagaaaccatattctacagaggtggggttcaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaact |
46238962 |
T |
|
| Q |
501 |
tgtgtgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgca |
600 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238963 |
tgtttgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgca |
46239062 |
T |
|
| Q |
601 |
gatgagattgccatctatgctgtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaact |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239063 |
gatgagattgccatctatgctgtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaact |
46239162 |
T |
|
| Q |
701 |
ttgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
751 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239163 |
ttgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
46239213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 519
Target Start/End: Original strand, 23540223 - 23540366
Alignment:
| Q |
376 |
aactgcatttttcaccatgggggagagtttgtcagggaagaaaccatattctacagaggtggggttcaaacccttgtgtctgacttagttccagatgctt |
475 |
Q |
| |
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|||||||| ||||||||||| || |||||| | ||| | ||||||| ||||| |||||||| || |||| |||||||||| ||| || ||||||| |
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| T |
23540223 |
aactgcatctttcaccatggtggggagttttttaggcataaaaccattttctatagaggtggtgtggaaacaattgtgtctgatatagaccctgatgctt |
23540322 |
T |
|
| Q |
476 |
ggaaagtaggtgttattaggcaacttgtgtgtagctggggttat |
519 |
Q |
| |
|
||||||||| ||||| | | ||||||| | |||||||||||| |
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| T |
23540323 |
ggaaagtagcagttatcaaggaacttgttaggagctggggttat |
23540366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 3 - 751
Target Start/End: Complemental strand, 3456193 - 3455444
Alignment:
| Q |
3 |
gaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctgat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456193 |
gaaagaaggagagaagacgaacgaagttgcgaagaagatgcaggaaacaatcgaagggcaatcgacggttatgaaaaacgttggagctccagttgctgat |
3456094 |
T |
|
| Q |
103 |
gtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacga |
202 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456093 |
gtaagttgtctattatgtgaatccctttactttcttctgtttactcctaagaatatgcatgctatttctttgtttattcttgttgtggtactgttaacga |
3455994 |
T |
|
| Q |
203 |
ggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctattgtggtatgtggggtctgt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3455993 |
ggaaaaggaggaaaacgttaaagaagttgtgaattttttagggttttaaattgatgtgaacttgttatgttgtttgtctattgtggtatgtggggtctgt |
3455894 |
T |
|
| Q |
303 |
gtgtggggtcgtttaagacacgtgtcttaatgttattggtccaattttatgtgtgcaggacaacaccaagtttaactgcatttttcaccatgggggagag |
402 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3455893 |
gtgtggggtcttataagacacgtgtcttaatgttattggtccaattttttgtgtgcaggacaacaccaagttcaactgcatttttcaccatgggggagag |
3455794 |
T |
|
| Q |
403 |
tttgtcagggaagaaaccatattctacagaggt-ggggttcaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaactt |
501 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3455793 |
tttgtcagggaagaaaccgtattctacagaggtgggggttaaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaactt |
3455694 |
T |
|
| Q |
502 |
gtgtgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcag |
601 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3455693 |
gtgtgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacagcattgcag |
3455594 |
T |
|
| Q |
602 |
atgagattgccatctatgctgtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaactt |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455593 |
atgagattgccatctatgctgtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaactt |
3455494 |
T |
|
| Q |
702 |
tgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
751 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3455493 |
tgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
3455444 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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