View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15823_low_12 (Length: 507)
Name: NF15823_low_12
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 26 - 493
Target Start/End: Complemental strand, 29066614 - 29066137
Alignment:
| Q |
26 |
agcataggcgtttctcgcgtcttcgccgttgtttttatcccaagcaacagattggagcttcgctcctaaagtgcggttgtcaccgtgatatcaatcaaga |
125 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29066614 |
agcataggcgtttctcgcgtcttcaccgttgtttttatcccaagcaacagattggagcttcgctcctaaagtgcggttgtcaccgtgatatcaatcaaga |
29066515 |
T |
|
| Q |
126 |
gttacgaaaaacacaactagtctatctcaaaagagaaaaatatagtaaaaggtgaag-ttttctcttatctttcatcagctgttgcagatgaagactggt |
224 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29066514 |
gttacgaaaaacacagctagtctatctcaaaagagaaaaatatagtgaaaggtgaagtttttctcttatctttcatcagctgttgcagatgaagactggt |
29066415 |
T |
|
| Q |
225 |
tttcatttttcgacatgcaccttttatatggcacaaaccctttcccacaagtttcacgcctcactcttactcttaactga---------gatgtttcaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29066414 |
tttcatttttcgacatgcaccttttatatggcacaaaccctttcccacaagtttcacgcctcactcttactcttaactgagatatggctgatgtttcaca |
29066315 |
T |
|
| Q |
316 |
tagtgtacttttgccaagaagttccagttttccttctccctttctaacatgtatgtcatgaggtattggtttgcatgcctcaattgttggagaagatggt |
415 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29066314 |
tagtgtacttttgccaagaagttccaattttccttctccctttctaacatgtatgtcatgaggtattggtttgcatgcctcaattgttggagaagatggt |
29066215 |
T |
|
| Q |
416 |
ttgcagaaatcttttacaaatagaatcgtcccaaaaagtttaagagttagacgagacgattcttctgctatgctttct |
493 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29066214 |
ttgcagaaatcttttacaattagagtcgtcccaaaaagtttaagagttggacgagacgattcttctgctatgctttct |
29066137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University