View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15823_low_16 (Length: 468)

Name: NF15823_low_16
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15823_low_16
NF15823_low_16
[»] chr4 (1 HSPs)
chr4 (5-468)||(49831727-49832210)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 5 - 468
Target Start/End: Complemental strand, 49832210 - 49831727
Alignment:
Q  5 gagtgagaagaataatttcataaggtttctcaaacatgattttaaggttgcatacttttat------------------atatagatatgtaaatcatgg 86  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||    
T  49832210 gagtgatatgaataatttcataaggtttctcaaacatgattttaaggttgcatacttttatgatacaccatggttattaatatagatatgtaaatcatgg 49832111  T
Q  87 gctaaaactgatttgatcatttgcccatcttatacaatcctttaattcaaacaaccaaacacgttgaattttcatcacgtttaccgttgagnnnnnnnnc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        |    
T  49832110 gctaaaactgatttgatcatttgcccatcttatacaatcctttaattcaaacaaccaaacacgttgaattttcatcacgtttaacgttgagaaaaaaaac 49832011  T
Q  187 cttacgtttaacactcatttccaaacatgcaatacaatgtttactttttagctttaatatattaagggtgaaaaatcaaatatgaaatattttgatgatt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49832010 cttacgtttaacactcatttccaaacatgcaatacaatgtttactttttagctttaatatattaagggtgaaaaatcaaatatgaaatattttgatgatg 49831911  T
Q  287 ttaaaaattgaaggagattgccttccattaacacaccattgtatatacaagtgacatcttaacannnnnnnnnnnnnnnnnnnnngcttctgcgtttata 386  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||                     |||||||||||||||    
T  49831910 ttaaagattgaaggagattgccttccattaacacaccattgtacatacaagtgacatcttaacattttttgctaatttttattttgcttctgcgtttata 49831811  T
Q  387 atcaaagtgctcttccaaa--ctctcttctcattcgagttagtttagttacccgttttaaatgtaacactgtttcgtatttacc 468  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49831810 atcagagtgctcttccaaactctctcttctcattcgagttagtttagttacccgttttaaatgtaacactgtttcgtatttacc 49831727  T

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