View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_19 (Length: 451)
Name: NF15823_low_19
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 47872192 - 47871760
Alignment:
| Q |
1 |
atttaagaattgtaagcctctgagggaaaagaaactggatcaaaaattgtgctcattgttgtagtaggataagttgactcaaacatctcctccgaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47872192 |
atttaagaattgtaagcctctgagggaaaagaaactggatcaaaaattgtgctcattgttgtagtaggataagttgactcaaacatctcctctgaaagaa |
47872093 |
T |
|
| Q |
101 |
ttggtaaagaagcttcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaaggccaataaccactaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47872092 |
ttggtaaagaagcttcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaaggccaataaccactaa |
47871993 |
T |
|
| Q |
201 |
acgttccatttgttcctcatcaaatgcacccccgagttttgtgtctaccacttcaagcaaccttccaagtctataaaggtcccagacccgatcaaatata |
300 |
Q |
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| T |
47871992 |
acgttccatttgttcctcatcaaatgcacccccgagttttgtgtctactacttcaagcaaccttccaagtctataaaggtcccagacccgatcaaatata |
47871893 |
T |
|
| Q |
301 |
gccacttgaccctccttggccttacgatcaattggttttcttccacttgctaattccaatgaaacaataccaaaactgtatatatcagattcctttgtag |
400 |
Q |
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| T |
47871892 |
gccacttgaccctccttggccttacgatcaattggttttcttccacttgctaattccaatgaaacaataccaaaactgtatatatcagattcctttgtag |
47871793 |
T |
|
| Q |
401 |
ctttccctgttgtgaaatattcaggagctatat |
433 |
Q |
| |
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| T |
47871792 |
ctttccctgttgtgaaatattcaggagctatat |
47871760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 97 - 431
Target Start/End: Original strand, 47873446 - 47873780
Alignment:
| Q |
97 |
agaattggtaaagaagcttcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaaggccaataacca |
196 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
47873446 |
agaattggtaaaggagcttcaagtttaagcacctgaatcacttgtcttacagatggcctaaatgaataatttggattggcacaccaaagaccaataacca |
47873545 |
T |
|
| Q |
197 |
ctaaacgttccatttgttcctcatcaaatgcacccccgagttttgtgtctaccacttcaagcaaccttccaagtctataaaggtcccagacccgatcaaa |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||| |||| |||||| |
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| T |
47873546 |
ctaaacgttccatttgttcctcatcaaatgcacccccgagttttgtgtctactacttcaagcaaccttcctaatctataaagctcccaaacccaatcaaa |
47873645 |
T |
|
| Q |
297 |
tatagccacttgaccctccttggccttacgatcaattggttttcttccacttgctaattccaatgaaacaataccaaaactgtatatatcagattccttt |
396 |
Q |
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|||||||| |||| |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |
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| T |
47873646 |
tatagccatttgatcctccttggcattaagatcaactggttttcttccacttgctaattccaatgaaacaatgccaaagctgtatatatctgattccttt |
47873745 |
T |
|
| Q |
397 |
gtagctttccctgttgtgaaatattcaggagctat |
431 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||| |
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| T |
47873746 |
gtagccttccctgttgtgatatattcaggagctat |
47873780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 23 - 433
Target Start/End: Complemental strand, 5821508 - 5821099
Alignment:
| Q |
23 |
agggaaaagaaactggatcaaaaattgtgctcattgttgtagtaggataagttgactcaaacatctcctccgaaagaattggtaaagaagcttcaaattt |
122 |
Q |
| |
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||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||| | |||||||| |||| |||||||||| || ||||||||| |
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| T |
5821508 |
agggaaaagaaacaggataaaaaattgagctcattgttgcagtaggataagttgattgaaacatcttt---gaaatcattggtaaaggaggttcaaattt |
5821412 |
T |
|
| Q |
123 |
aagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacacc--aaaggccaataaccactaaacgttccatttgttcctcat |
220 |
Q |
| |
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||| | || |||||||||||||||| |||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
5821411 |
aagaaacttaatcacttgtcttacacatggcctaaatgaataatttggattgatacaccataaagtccaataaccactaaacgttccaattgttcctcat |
5821312 |
T |
|
| Q |
221 |
caaatgcacccccgagttttgtgtctaccacttcaagcaaccttccaagtctataaaggtcccagacccgatcaaatatagccacttgaccctccttggc |
320 |
Q |
| |
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||||| | ||| |||||| ||| || |||||||||||| |||| |||||||| | |||||| || | |||||||||||| |||||| || ||||| |
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| T |
5821311 |
caaatacgtgcccaagttttctgtatattacttcaagcaactttcctagtctatacaagtcccaaacacaatcaaatatagctacttgattatctttggc |
5821212 |
T |
|
| Q |
321 |
cttacgatcaattggttttcttccacttgctaattccaatgaaacaat--accaaaactgtatatatcagattcctttgtagctttccctgttgtgaaat |
418 |
Q |
| |
|
|||||||||| ||||||| ||||||||| | |||| ||| ||||||| | |||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
5821211 |
cttacgatcagttggtttccttccacttaccaattttaataaaacaattcaaaaaaactgtatatatcatattcctttgtagctttccttgttgtgaa-- |
5821114 |
T |
|
| Q |
419 |
attcaggagctatat |
433 |
Q |
| |
|
|||||||||||||| |
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| T |
5821113 |
gttcaggagctatat |
5821099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 36931804 - 36931692
Alignment:
| Q |
115 |
tcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaaggccaataaccactaaacgttccatttgtt |
214 |
Q |
| |
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|||||||| || ||||||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||||||||| || ||| |||||||||| ||||| |
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| T |
36931804 |
tcaaatttgagaacctgaatcacttgtcttatagaaggcctgaatgaataatctggatgaacacaccaaaggccaacaatcaccaaacgttccagttgtt |
36931705 |
T |
|
| Q |
215 |
cctcatcaaatgc |
227 |
Q |
| |
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|||||||||||| |
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| T |
36931704 |
gctcatcaaatgc |
36931692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 36931579 - 36931494
Alignment:
| Q |
340 |
cttccacttgctaattccaatgaaacaataccaaaactgtatatatcagattcctttgtagctttccctgttgtgaaatattcagg |
425 |
Q |
| |
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|||||||| |||| ||||||| | || | ||||| ||| |||||||||||||||| |||| || |||| ||||||||||||||| |
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| T |
36931579 |
cttccactggctatttccaataacactactccaaagctgaatatatcagattccttggtaggctttcctgatgtgaaatattcagg |
36931494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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