View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_22 (Length: 433)
Name: NF15823_low_22
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 52477920 - 52477516
Alignment:
| Q |
17 |
atatatagcacttaggtggtttcaaagaagcagatgaatcaaaatgctttcccaattagtaaaagaacatccttactttgttggtttcttattggtgttt |
116 |
Q |
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| T |
52477920 |
atatatagcacttaggtggtttcaaagaagcagatgaatcaaaatgctttcccaattagtaaaagaacatccttactttgttggtttcttattggtgttt |
52477821 |
T |
|
| Q |
117 |
ttatcatctttaaaagtgtgtgcactttggtgcaaaaacaacaagtgcagttgtagtgttggcattcctccgggaaatcgaggattacccttcataggag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52477820 |
ttatcatctttaaaagtgtgtgcactttggtgcaaaaacaacaagtgcagtcgtagtgttggcattcctccgggaaatcgaggattacccttcataggag |
52477721 |
T |
|
| Q |
217 |
agacactgcacttcatggctgccatcaacagtaccaaaggtgtctatgaatttgtccgacttcgccgcctccggtaaccaaatccgttatttcacttgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52477720 |
agacactgcacttcatggctgccatcaacagtaccaaaggtgtctatgaatttgtccgacttcgccgcctccggtaaccaaatccgttatttcacttgat |
52477621 |
T |
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| Q |
317 |
ttatttttgactctgactctcatgctggttttgtccttggaacttatgttccttatcacttctagtcacaattgcatcttcaaaacaaaacgcaagacac |
416 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52477620 |
ttatttttga--ctgactctcatgctggttttgtccttggaacttatgttccttatcacttctagtcacaattgcatcttcaaaacaaaacgcaagacac |
52477523 |
T |
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| Q |
417 |
ttctctg |
423 |
Q |
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||||||| |
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| T |
52477522 |
ttctctg |
52477516 |
T |
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