View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_27 (Length: 373)
Name: NF15823_low_27
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 6522813 - 6522456
Alignment:
| Q |
1 |
tttttctgtttataatttaaactgtaaatttttagaaccaaatcacaataacataaaattttagcatcaaagtaatttattttagactaacagtagcata |
100 |
Q |
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| T |
6522813 |
tttttctgtttataatttaaactgtaaatttttagaaccaaatcacaatagcataaaattttagcatcaaagtaatttattttagaataacagtagcata |
6522714 |
T |
|
| Q |
101 |
atatcttatttctcttgtatattttgacagtagctagcatctatatcaatagcaaaacacaatttgtagcatcccacagtaacataaaaagagaatggta |
200 |
Q |
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| T |
6522713 |
atatcttatttctcttgtatattttgacagtagc----atctatatcaatagcaaaacacaatttgtagcatcccacagtaacataaaaagagaatggta |
6522618 |
T |
|
| Q |
201 |
aaacatgtagaagcagaatatgcaacatgatattctcaacaaaactttagggtgttgtatggtcgttcacctttatttatttacaccaacatgatattca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6522617 |
aaacatgtagaagcagaatatgcaacatgatattctcaacaaaactttagggtgttgtatggtcgttcacctttatttatttacaccaacatgatattca |
6522518 |
T |
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| Q |
301 |
aattatttccttgagtttcctttaatatgcaatacatagtagtacattcaaattatttcctt |
362 |
Q |
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| T |
6522517 |
aattatttccttgagtttcctttaatatgcaatacatagtagtacattcaaattatttcctt |
6522456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 31449538 - 31449447
Alignment:
| Q |
30 |
ttttagaaccaaatcacaataacataaaattttagcatcaaagtaatttattttagactaacagtagcataatatcttatttctcttgtatat |
122 |
Q |
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| T |
31449538 |
ttttagaaccaa-tcactgtagcataaaatattagcatcaaagtaatttatttcgaaaaagcagtagcataaaatcttatttcttttgtatat |
31449447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 31448897 - 31448849
Alignment:
| Q |
159 |
acaatttgtagcatcccacagtaacataaaaagagaatggtaaaacatg |
207 |
Q |
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| T |
31448897 |
acaatttgtagcaatccacagtaacttaaaaagacaatgctaaaacatg |
31448849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 20902865 - 20902980
Alignment:
| Q |
89 |
aacagtagcataatatcttatttctcttgtatattttgacagtagctagcatctatatca-atagcaaaacacaatttgtagcatcccacagtaacataa |
187 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||| | ||| ||| ||| | |||| |||||||||||||| | |||||||||| ||| |
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| T |
20902865 |
aacagtagcataaaatcttatttctcttgcatattttgacag----catcatatatttcagagagcagaacacaatttgtaggagtccacagtaacttaa |
20902960 |
T |
|
| Q |
188 |
aaagagaatggtaaaacatg |
207 |
Q |
| |
|
||||| |||| || |||||| |
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|
| T |
20902961 |
aaagacaatgctagaacatg |
20902980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 5770136 - 5770246
Alignment:
| Q |
91 |
cagtagcataatatcttatttctcttgtatattttgacagtagctagcatctatatcaatagcaaaacacaatttgtagcatcccacagtaacataaaaa |
190 |
Q |
| |
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||||| ||||| |||| |||||||||||||||||||||||| | || ||||||||||||||| |||||||| |||| |||| ||| ||||||||| |
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| T |
5770136 |
cagtatcataaattcttgtttctcttgtatattttgacagtacc----atatatatcaatagcaaa-cacaattta-agcagccca-agtgacataaaaa |
5770228 |
T |
|
| Q |
191 |
gagaatggtaaaacatgt |
208 |
Q |
| |
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|| |||| |||||||||| |
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| T |
5770229 |
gacaatgctaaaacatgt |
5770246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 20902750 - 20902790
Alignment:
| Q |
89 |
aacagtagcataatatcttatttctcttgtatattttgaca |
129 |
Q |
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| T |
20902750 |
aacagtagcataaaatattatttctcttgtatattttgaca |
20902790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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