View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15823_low_28 (Length: 372)
Name: NF15823_low_28
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 37047299 - 37047643
Alignment:
| Q |
18 |
catatatgacatctgcactaacttatgatactgaattaatgtaacagaacacagttaatttttgtttcctaagtaa--------taaaatctgcttcaat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
37047299 |
catatatgacatctgcactaacttatgatactgaattaatgtaacagaacacagttaattttt-tttcctaattaagttattaataaaatctgcttcaat |
37047397 |
T |
|
| Q |
110 |
atttagtttgggtctgcaaatatttagtatccaattcagttaagaataaaagctactatactattatgacatgattttacattagaaaacatggcagctg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37047398 |
ctttagtttgggtctgcaaatatttagtatccaaatcagttaagaataaaagctactatactattatgacattattttacattagaaaacatggcagctg |
37047497 |
T |
|
| Q |
210 |
atatattatcataagaaataaactgaacannnnnnnngacaaaaaatcgactgaacatatactattaacaatttagatgtgcgtctatatgtagtagaaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37047498 |
atatattatcataagaaataaactgaacattttttttgacaaaaaatcgactgaa-------tattaacaatttagatgtgcgtctatatgtagtagaaa |
37047590 |
T |
|
| Q |
310 |
gaataatgcaaacaatatcaatatgtaaacaataacagttttctcattctctg |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37047591 |
gaataatgcaaacaatatcaatatgtaaacaataacagttttctcattctctg |
37047643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University