View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_29 (Length: 372)
Name: NF15823_low_29
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 11493303 - 11492948
Alignment:
| Q |
1 |
aatatagagtccaatgctgaattgtatcaaaagttcaaagcttggttggaaaaattttcaaagcaggagcaaatttcaattaaaggtcaaaagaagcaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11493303 |
aatatagagtccaatgctgaattgtatcaaaagttcaaagcttggttggaaaaattttcaaagcaggggcaaatttcaattaaaggtcaaaagaagcaaa |
11493204 |
T |
|
| Q |
101 |
aaccatcgacaactagaatttcgatccaagaggcagaatctactcaaatagaacataaaaaagcgggatcacatgaaacaatcacatggtcaacaaggtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||| |
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| T |
11493203 |
aaccatcgacaactagaatttcgatccaagaggtagaatctactcaaatagaacataaaaa-gcaggatcacatgaaacagtcacatgttcaacaaggtc |
11493105 |
T |
|
| Q |
201 |
ttttattagttatctatttgtgttagtatttaaatcaaaattcaaaaaactaattatactcttgatacagacttgaactaaatatttatttgtttgatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
11493104 |
ttttattagttatctatttgtgttagtatttaaatcaaaattcaaaaagctaattatactcttgatattgacttgaactaaatatttatttgtttcatgt |
11493005 |
T |
|
| Q |
301 |
gtctaaaagccaaactagtggacggctctatgatgaatggattaagcaacaaagttt |
357 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11493004 |
gtctaaaagccaaactagtggacggctctatcatgaatggattaagcaacaaagttt |
11492948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 11492225 - 11492181
Alignment:
| Q |
313 |
aactagtggacggctctatgatgaatggattaagcaacaaagttt |
357 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
11492225 |
aactagtggacgactctatgatgaatggattaagcaacaaagttt |
11492181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 11492780 - 11492738
Alignment:
| Q |
318 |
gtggacggctctatgatgaatggattaagcaacaaagtttctg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
11492780 |
gtggacggctctatgatgaatggattaaggaacaaagtttctg |
11492738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 11492505 - 11492461
Alignment:
| Q |
313 |
aactagtggacggctctatgatgaatggattaagcaacaaagttt |
357 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||||||||||||| |
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|
| T |
11492505 |
aactagtggacgaccctttgatgaatggattaagcaacaaagttt |
11492461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 19890876 - 19891234
Alignment:
| Q |
1 |
aatatagagtccaatgctgaattgtatcaaaagttcaaagcttggttggaaaaattttcaaagcaggagcaaatttcaattaaaggtcaaaagaagcaaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19890876 |
aatatagagtccaatgctgaaatgtatcaaaagttcaaagcttggttggaaaatttttcaaagcaggggcaaatttcaattaaaggtcaaaagaagcaaa |
19890975 |
T |
|
| Q |
101 |
aaccatcgacaactagaatttcgatccaagaggcagaatctactcaaatagaacataaaaaagcgggatcacatgaaacaatcacatggtcaacaaggtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
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| T |
19890976 |
aaccatcgacaactagaatttcgatccaagaggcagaatctgctcaaatagaacataaaaa-gcaggatcacatgaaacaatcacatgttcaacaaggtc |
19891074 |
T |
|
| Q |
201 |
ttttattagttatctatttgtgttagtatttaaatcaaaattcaaaaaactaattatactcttgatacagacttgaactaaatatttatttgtttgatgt |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
19891075 |
ttttattagttatctatttgtgtcagtatttaaatcaaaattcaaaatgctaattatactcttgatactgacttgaactaaatatttatttgtttcatgt |
19891174 |
T |
|
| Q |
301 |
gtctaaaagccaaactagtggacggctctatgatgaatggattaagcaacaaagtttctg |
360 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19891175 |
gtctaaaagccaaactagtggaaggctctatgatgaatggattaaacaacaaagtttctg |
19891234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 19891394 - 19891441
Alignment:
| Q |
313 |
aactagtggacggctctatgatgaatggattaagcaacaaagtttctg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
19891394 |
aactagtggacggctctatgatgaatggattaaggaacaaagtttctg |
19891441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 19891947 - 19891994
Alignment:
| Q |
313 |
aactagtggacggctctatgatgaatggattaagcaacaaagtttctg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
19891947 |
aactagtggacggctctatgatgaatggattaaggaacaaagtttctg |
19891994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 19891674 - 19891718
Alignment:
| Q |
313 |
aactagtggacggctctatgatgaatggattaagcaacaaagttt |
357 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
19891674 |
aactagtggacgactctatgatgaatggattaagcaacaaagttt |
19891718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 230 - 360
Target Start/End: Original strand, 24242314 - 24242444
Alignment:
| Q |
230 |
ttaaatcaaaattcaaaaaactaattatactcttgatacagacttgaactaaatatttatttgtttgatgtgtctaaaagccaaactagtggacggctct |
329 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
24242314 |
ttaaatcaaaattcaaaaagctaattatactcttgatactgacttgaactaaatatttatttgtttcatgtgtctaaaagccaaactagtggacagctct |
24242413 |
T |
|
| Q |
330 |
atgatgaatggattaagcaacaaagtttctg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
24242414 |
atgatgaatggattaagcaacaaagtttctg |
24242444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 24242894 - 24242941
Alignment:
| Q |
313 |
aactagtggacggctctatgatgaatggattaagcaacaaagtttctg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24242894 |
aactagtggacggctctatgatgaatggattaaggaacaaagtttctg |
24242941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 24243174 - 24243218
Alignment:
| Q |
313 |
aactagtggacggctctatgatgaatggattaagcaacaaagttt |
357 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24243174 |
aactagtggacgactctatgatgaatggattaagcaacaaagttt |
24243218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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