View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_3 (Length: 708)
Name: NF15823_low_3
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Original strand, 49461253 - 49461877
Alignment:
| Q |
1 |
aaaaatgtttggtaagttgttgatatttctagcgactttcttaaaagttttatagtcaaaaacttacattcccaagtccaacaagagaataaattattgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49461253 |
aaaaatgtttggtaagttgttgatatttctagcgactttcttaaaagttttatagtcaaaaacttacattcccaagtccaacaagagaataaattattgc |
49461352 |
T |
|
| Q |
101 |
ccagaatctataatcatgcatgagctccggattttcaaataaagatgcagatacatttttaaccgatgatcactcaatctatgatgacccgtttgataaa |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49461353 |
ccagaatctataatcatgcatgagctctggattttcaaataaaaatgcagatacatttttaaccgatgatcactcaatctatgatgacccgtttgataaa |
49461452 |
T |
|
| Q |
201 |
acaaaataaagacaaactgcaacagttgtataacaatctacaagtagatttggcatcacatgcaactatcacaa--ttctttttgtagataaatggaatg |
298 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
49461453 |
acaaaataaagacaaactgcaacagttgtataacattctacaagtagatttggcatcaaatgcaactatcacaattttttttttgtagataaatggaatg |
49461552 |
T |
|
| Q |
299 |
acaataaccaatggaaaactcaaacaaatgaggga---------------tgggtcacggtatccagtctaacaatttcaacatttgctagttgaactat |
383 |
Q |
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| T |
49461553 |
acaataaccaattgaaaactcagacaactgagggatcccatgtttgaacctgagtcacggtatccagtctaacaatttcaacatttgctagttgaactat |
49461652 |
T |
|
| Q |
384 |
gacttgggaacacaccgatcatatttttatataagccattgatctttcaatcattaccattttctttacaaatttagagaattttacatgaaccaagaaa |
483 |
Q |
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| T |
49461653 |
gacttgggaacacaccgatcatattttcatacaagccattgatctttcaatcattacaattttctttacaaatttagagaattttacatgaaccaagaaa |
49461752 |
T |
|
| Q |
484 |
ctcagacctctacataccttcttcccacatagaatgacaactatgctaaaacacaataaatcttgttgaaactgctgaaaccttcatatcaagttgatta |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49461753 |
ctcagacctctacataccttcttcccacatagaatgacaactatgctaaaacacaacaaatcttgttgaaactgctgaaaccttcatatcaagttgatta |
49461852 |
T |
|
| Q |
584 |
tggcaagtatataactataacagga |
608 |
Q |
| |
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| T |
49461853 |
tggcaagtatataactataacagga |
49461877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 373 - 605
Target Start/End: Original strand, 42175728 - 42175963
Alignment:
| Q |
373 |
agttgaactatgacttgggaacacaccgatcatatttttatataagccattgatctttcaatcattaccattttctttacaaatttagagaattttacat |
472 |
Q |
| |
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| T |
42175728 |
agttgaactaggatttgtgaaagcaacgatcacatttttatataagttcttgatttttcaatcattacaattttcttt--aaatttagagaattttacaa |
42175825 |
T |
|
| Q |
473 |
gaaccaagaaactcagacctctacataccttcttcccacatagaatgacaactatgctaa--aacacaataaatcttgttgaaactgctga----aacct |
566 |
Q |
| |
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||| | ||||| | || || ||||||||||||||||||||||| | ||||||| |||| ||| || || ||||| ||||||||| || ||||| |
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| T |
42175826 |
aaacgaggaaaccccga-ctttacataccttcttcccacatagagcgccaactatactaattcacagaacaagtcttgctgaaactgcggaacagaacct |
42175924 |
T |
|
| Q |
567 |
tcatatcaagttgattatggcaagtatataactataaca |
605 |
Q |
| |
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|||||||||||| ||||||| ||||| ||||| ||||| |
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| T |
42175925 |
gcatatcaagttgtttatggctagtatctaactctaaca |
42175963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 633 - 673
Target Start/End: Original strand, 49461902 - 49461942
Alignment:
| Q |
633 |
atgtaacaccaaaattgaatgaaaccaactggaaaaactta |
673 |
Q |
| |
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| T |
49461902 |
atgtaacaccaaaattgaatgaaaccaactggaaaaactta |
49461942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 42175352 - 42175396
Alignment:
| Q |
2 |
aaaatgtttggtaagttgttgatatttctagcgactttcttaaaa |
46 |
Q |
| |
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||||||||||| ||||| |||||||||||||| |||| ||||||| |
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| T |
42175352 |
aaaatgtttgggaagttattgatatttctagcaacttccttaaaa |
42175396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 11012024 - 11011980
Alignment:
| Q |
345 |
atccagtctaacaatttcaacatttgctagttgaactatgacttg |
389 |
Q |
| |
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|||||| |||||||||||| |||||||||||||| ||| |||||| |
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| T |
11012024 |
atccagcctaacaatttcagcatttgctagttgagctaggacttg |
11011980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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