View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15823_low_30 (Length: 370)

Name: NF15823_low_30
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15823_low_30
NF15823_low_30
[»] chr3 (12 HSPs)
chr3 (121-351)||(29712885-29713115)
chr3 (22-355)||(29746798-29747134)
chr3 (172-343)||(29751764-29751935)
chr3 (165-312)||(29648978-29649125)
chr3 (165-234)||(30223119-30223188)
chr3 (165-313)||(30201116-30201264)
chr3 (165-249)||(30230345-30230429)
chr3 (269-333)||(29698802-29698866)
chr3 (165-328)||(29721021-29721184)
chr3 (167-313)||(30227291-30227437)
chr3 (167-276)||(29856826-29856935)
chr3 (188-269)||(30214706-30214787)
[»] chr8 (1 HSPs)
chr8 (167-339)||(1152915-1153087)
[»] chr4 (1 HSPs)
chr4 (17-111)||(41100775-41100869)
[»] chr6 (2 HSPs)
chr6 (173-313)||(5569421-5569561)
chr6 (189-313)||(5574415-5574539)
[»] chr1 (2 HSPs)
chr1 (179-261)||(16955668-16955750)
chr1 (180-261)||(16966187-16966268)
[»] chr5 (1 HSPs)
chr5 (165-201)||(11635019-11635055)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 121 - 351
Target Start/End: Complemental strand, 29713115 - 29712885
Alignment:
Q  121 acaaatcttctccatgcacgaactactaaagttaaaacgacaagtcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaagga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29713115 acaaatcttctccatgcacgaactactaaagttaaaacgacaaatcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaagaa 29713016  T
Q  221 caaacattacgtgcaattgtcacaatttcaacagtatcaagtctttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcg 320  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29713015 caaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagtatgttcttcatcaggtctattggaagttcaagccaatttggctttgtcg 29712916  T
Q  321 tgctctcacctttagctttcttcgtacagga 351  Q
    |||||||||||||||||||||||||||||||    
T  29712915 tgctctcacctttagctttcttcgtacagga 29712885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 355
Target Start/End: Original strand, 29746798 - 29747134
Alignment:
Q  22 taattacctatgagccatatatttgagaagttcatctgttccaaaccccctaacagcaatgtcttctagttgaccgcaacttaggtcaattgcacagcga 121  Q
    ||||||||||||||||| |||||  ||||||||||| ||| ||||||  |||| || ||||||||| || | || || |||||||||||| |||| ||||    
T  29746798 taattacctatgagccaaatattcaagaagttcatcagttgcaaaccagctaatagtaatgtcttccagattactgctacttaggtcaatggcactgcga 29746897  T
Q  122 caaatcttctccatgcacg---aactactaaagttaaaacgacaagtcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaag 218  Q
    ||||||||| ||||| | |   ||| |  || | | |||| || ||  |||||||||||||||||||||||||| |||| |||||| |||||||||||||    
T  29746898 caaatcttccccatgtaagcaaaacaatcaatggtgaaaccactagctatgtgaatggtacgccacattagagggtcctggcaaattttccgccacaaag 29746997  T
Q  219 gacaaacattacgtgcaattgtcacaatttcaacagtatcaagtctttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgt 318  Q
    |||||||||| |||||| |||||||||| |||| |||| ||||||| ||||||||||||||  ||| | |||| |||||||| ||||| |||||||||||    
T  29746998 gacaaacattgcgtgcacttgtcacaatatcaatagtaccaagtctctgaagtatgttctttgtcaagcctatcggaagttcaagccagtttggctttgt 29747097  T
Q  319 cgtgctctcacctttagctttcttcgtacaggacccc 355  Q
    |||||| ||| |||||||||||||  |||| ||||||    
T  29747098 cgtgctatcaactttagctttcttgatacacgacccc 29747134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 172 - 343
Target Start/End: Complemental strand, 29751935 - 29751764
Alignment:
Q  172 aatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtctttgaagt 271  Q
    |||||||| |||||| ||||||||||||||||  |||| ||| | ||||||||||||||||||| |||||||||||||||| |||||||||||  |||||    
T  29751935 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacggtatcaagtctccgaagt 29751836  T
Q  272 atgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctctcacctttagctttcttc 343  Q
    ||||||||  ||| ||| ||||||||||| | ||| |||||||||||| ||| |||| ||||  ||||||||    
T  29751835 atgttctttgtcaagtcaattggaagttcaatccagtttggctttgtcatgcactcaactttcactttcttc 29751764  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 312
Target Start/End: Complemental strand, 29649125 - 29648978
Alignment:
Q  165 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtct 264  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||| | | | |||||| ||    | |||| |||| ||||||||||||||||||| ||     
T  29649125 tcatgtgaatggtacgccacatgagaggatccttacaaatgttccacgatagaggacatactaggcatgcatttgttacaatttcaacagtatcaactcc 29649026  T
Q  265 ttgaagtatgttcttcatcaggtctattggaagttcgagccaatttgg 312  Q
    |||||| |||||  |  | | |||| |||||||||| |||||||||||    
T  29649025 ttgaaggatgttaattgtgatgtctcttggaagttcaagccaatttgg 29648978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 30223188 - 30223119
Alignment:
Q  165 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgc 234  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||| |||  ||||||| ||||| |||||    
T  30223188 tcatgtgaatggtgcgccacatgagaggatccttgcaaatgttccaccaataaggacacacattgcgtgc 30223119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 313
Target Start/End: Complemental strand, 30201264 - 30201116
Alignment:
Q  165 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtct 264  Q
    |||| ||||||||  ||||||| ||||||||||||||||| |||| ||| | |||||| || | || |||| |||||||||||||||  |||  ||| ||    
T  30201264 tcatatgaatggtgtgccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcct 30201165  T
Q  265 ttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggc 313  Q
    |||||| ||||| |   | | |||| | |||||||| ||||||||||||    
T  30201164 ttgaagaatgttttctgtaatgtctttaggaagttcaagccaatttggc 30201116  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 30230429 - 30230345
Alignment:
Q  165 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttc 249  Q
    ||||||||||||| ||||||||  ||||||||||||||||  ||| |||  ||||||| ||||| |||||| |||||| ||||||    
T  30230429 tcatgtgaatggtgcgccacatgcgaggatccttgcaaatgctccaccaataaggacacacattgcgtgcatttgtcaaaatttc 30230345  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 29698866 - 29698802
Alignment:
Q  269 agtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctctcaccttt 333  Q
    |||||||||||| |||  |||||||||||||| ||||| ||||||||| | ||||||||| ||||    
T  29698866 agtatgttcttcgtcaattctattggaagttcaagccagtttggctttcttgtgctctcatcttt 29698802  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 328
Target Start/End: Complemental strand, 29721184 - 29721021
Alignment:
Q  165 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtct 264  Q
    ||||||||||||| ||||||||  |||  || |||||||| |||| |||  ||||||| ||||| |||||| | ||||  ||||| |  |  ||||| ||    
T  29721184 tcatgtgaatggtgcgccacatgcgagagtctttgcaaatgttccaccaataaggacacacatttcgtgcagtcgtcaggatttcgaaggagtcaagcct 29721085  T
Q  265 ttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctctca 328  Q
    | | ||||||||  |  | |||||| |||||||||| ||||||||||||||||  |||||||||    
T  29721084 tgggagtatgttggttgtaaggtctcttggaagttcaagccaatttggctttggtgtgctctca 29721021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 313
Target Start/End: Complemental strand, 30227437 - 30227291
Alignment:
Q  167 atgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtcttt 266  Q
    |||| |||||| |||||||| ||||||||||||||||| |||| | | | |||||| || | || |||| |||||||||| || |  ||| |||| ||||    
T  30227437 atgtaaatggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagccttt 30227338  T
Q  267 gaagtatgttcttcatcaggtctattggaagttcgagccaatttggc 313  Q
    |||| |||||  |  | | |||| | |||||||| ||||||||||||    
T  30227337 gaagaatgtttgttgtgatgtctctaggaagttcaagccaatttggc 30227291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 276
Target Start/End: Complemental strand, 29856935 - 29856826
Alignment:
Q  167 atgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtcttt 266  Q
    |||||||||||||||||||  |||||||| || || || | || ||| | ||||||||| | || |||| || |||| |||||||  |||||||| ||||    
T  29856935 atgtgaatggtacgccacaggagaggatctttacatatgtcccaccatagaggacaaacttgacatgcacttttcacgatttcaattgtatcaagccttt 29856836  T
Q  267 gaagtatgtt 276  Q
    |||| |||||    
T  29856835 gaaggatgtt 29856826  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 30214787 - 30214706
Alignment:
Q  188 agaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtctttgaa 269  Q
    ||||||||||||||||| |||| ||| | |||||| || | || |||| |||||||||| ||||  ||| ||||||||||||    
T  30214787 agaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatctcaatggtaccaagtctttgaa 30214706  T

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Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 167 - 339
Target Start/End: Original strand, 1152915 - 1153087
Alignment:
Q  167 atgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtcttt 266  Q
    |||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  1152915 atgtgaatggtacgccacattagaggatccttgcaaatgtgccaccacagaggacaaacattacgtgcacttgttacaatttcaacagtatccagtcttt 1153014  T
Q  267 gaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctctcacctttagcttt 339  Q
    |||| |||||| | |||| ||||||||||||||  ||||||||||| ||| | ||||||||| |||| |||||    
T  1153015 gaaggatgttccttatcaagtctattggaagttgaagccaatttggatttcttgtgctctcaactttcgcttt 1153087  T

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Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 41100775 - 41100869
Alignment:
Q  17 aaaactaattacctatgagccatatatttgagaagttcatctgttccaaaccccctaacagcaatgtcttctagttgaccgcaacttaggtcaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||    
T  41100775 aaaactaattacctatgagccatatatttgagaagttcatcggttccaaaccccctaacagcaatgtcttccagatgactgcaacttaggtcaat 41100869  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 313
Target Start/End: Original strand, 5569421 - 5569561
Alignment:
Q  173 atggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtctttgaagta 272  Q
    |||||||||||||  ||||||||||||||||| |||| ||| | |||||| || | || |||| |||| || |  |||| ||||||||| |||||||| |    
T  5569421 atggtacgccacacaagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaagga 5569520  T
Q  273 tgttcttcatcaggtctattggaagttcgagccaatttggc 313  Q
    |||||  | | | |||| |||||||| | ||||||||||||    
T  5569521 tgttcaccgtgatgtctcttggaagtgcaagccaatttggc 5569561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 5574415 - 5574539
Alignment:
Q  189 gaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtctttgaagtatgttcttcatcaggtc 288  Q
    |||||||||||||||| |||| ||| | |||||| || | || |||| |||| || |  |||| ||||||||| |||||||| ||||||  | | | |||    
T  5574415 gaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaaggatgttcaccgtgatgtc 5574514  T
Q  289 tattggaagttcgagccaatttggc 313  Q
    | |||||||| | ||||||||||||    
T  5574515 tcttggaagtgcaagccaatttggc 5574539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 16955668 - 16955750
Alignment:
Q  179 cgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaag 261  Q
    |||||||| |||||||||||||||||||||| ||| ||||| || || | || | || |||| |||||||||| |||||||||    
T  16955668 cgccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaag 16955750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 16966187 - 16966268
Alignment:
Q  180 gccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaag 261  Q
    |||||||  ||||||||||||||||||||| ||| |||||||| || | || | || |||| || ||||||| |||||||||    
T  16966187 gccacatgtgaggatccttgcaaatattccaccataaaggacacacttgacatacacttgtgactatttcaatagtatcaag 16966268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 11635055 - 11635019
Alignment:
Q  165 tcatgtgaatggtacgccacattagaggatccttgca 201  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  11635055 tcatgcgaatggtacgccacatgagaggatccttgca 11635019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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