View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_33 (Length: 364)
Name: NF15823_low_33
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 49654724 - 49655069
Alignment:
| Q |
1 |
accattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654724 |
accattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaat |
49654823 |
T |
|
| Q |
101 |
gggtgttctattatgtgatgttgcannnnnnnn--ctgattttgtttgttctgttataggatagttttgttatggtaattttgtaattgacacaagttta |
198 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654824 |
gggtgttctattatgtgatgttgcattttttttttctgattttgtttgttctgttataggatagttttgttatggtaattttgtaattgacacaagttta |
49654923 |
T |
|
| Q |
199 |
gcttatagtatgtggtttatgtccttagtttagtcggggggctaattttacatttagaagatcttagtcttaacactggaaatgctctgctcatagcttt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654924 |
gcttatagtatgtggtttatgtccttagtttagtcgggg--ctaattttacatttagaagatcttagtcttaacactggaaatgctctgctcatagcttt |
49655021 |
T |
|
| Q |
299 |
agcttattttgattttggactaaactgtaaatgatgttctaatagcct |
346 |
Q |
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| T |
49655022 |
agcttattttgattttggactaaactgtaaatgatgttctaatagcct |
49655069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 16486371 - 16486487
Alignment:
| Q |
1 |
accattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaat |
100 |
Q |
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||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | |
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| T |
16486371 |
accattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaaatgcaagt |
16486470 |
T |
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| Q |
101 |
gggtgttctattatgtg |
117 |
Q |
| |
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||||||||| ||||||| |
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| T |
16486471 |
gggtgttctgttatgtg |
16486487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 21816539 - 21816423
Alignment:
| Q |
1 |
accattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaat |
100 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | |
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| T |
21816539 |
accattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaaatgcaagt |
21816440 |
T |
|
| Q |
101 |
gggtgttctattatgtg |
117 |
Q |
| |
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||||||||| ||||||| |
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| T |
21816439 |
gggtgttctgttatgtg |
21816423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 14381288 - 14381210
Alignment:
| Q |
40 |
ttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtga |
118 |
Q |
| |
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||||||| |||||||| ||| ||| |||| |||||||| || |||||||||||||||| ||| ||||| ||||||||| |
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| T |
14381288 |
ttatcaggttcaatctggaccgttggttccttttgagttatttagtgatgaaaatgcaagtggatgttccattatgtga |
14381210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 8551537 - 8551505
Alignment:
| Q |
244 |
ttttacatttagaagatcttagtcttaacactg |
276 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
8551537 |
ttttacatttagaagatcttagtcttgacactg |
8551505 |
T |
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