View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_34 (Length: 361)
Name: NF15823_low_34
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 33761900 - 33761554
Alignment:
| Q |
1 |
cagacatcttaacacttgctagaagagatgttttggccttatccggaggaccaaaatacaatgttccgactaagcttgtgaagttgtttgcatcaggcaa |
100 |
Q |
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| T |
33761900 |
cagacatcttaacactttctagaagagatgttttggccttatccggaggaccaaaatacaatgttccgactaagcttgtgaaattgtttgaatcaggcaa |
33761801 |
T |
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| Q |
101 |
tgatgctgcaattttgtatcagaatacttcttttattcttgataatgaattttaccaacaatttcttctcaagagaggtatattgcagatcgatcagaaa |
200 |
Q |
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| T |
33761800 |
tgatgctgcaattttgtattagaagacttcttttattcttgataatgaattttaccaacaatttcttctcaagagaggtatattgcagatcgatcagaaa |
33761701 |
T |
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| Q |
201 |
cttactttggttaaatcaacaagtccttttgtgtctaattttgcttcaaatggtgataagtttgttaagagttttgcaactgctatgataaagatggnnn |
300 |
Q |
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| T |
33761700 |
cttactttggttaaatcaacaagtccttttgtgtctaattttgcttcaaatggtgataagtttgttaagagttttgcaactgctatgataaagatggaaa |
33761601 |
T |
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| Q |
301 |
nnnnntggatttttgttaggaaatgaaggagaaattcggaagaatat |
347 |
Q |
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| T |
33761600 |
aaaaatggatttttgttaggaaatgaaggagaaattcggaagaatat |
33761554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 104 - 297
Target Start/End: Complemental strand, 33763849 - 33763656
Alignment:
| Q |
104 |
tgctgcaattttgtatcagaatacttcttttattcttgataatgaattttaccaacaatttcttctcaagagaggtatattgcagatcgatcagaaactt |
203 |
Q |
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| T |
33763849 |
tgctgcatttttggatcagaatacttcttttactgttgataatgaattttacaagcagattcttcttaagagaggtataatgcagattgatcagcaactt |
33763750 |
T |
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| Q |
204 |
actttggttaaatcaacaagtccttttgtgtctaattttgcttcaaatggtgataagtttgttaagagttttgcaactgctatgataaagatgg |
297 |
Q |
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| T |
33763749 |
gctttggataaatcaacaagtacttttgtgtctaattttgcttcaaatggtgataagtttgttaagagtttcgcaaccgctatgataaagatgg |
33763656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 33755924 - 33755639
Alignment:
| Q |
1 |
cagacatcttaacacttgctagaagagatgttttggccttatccggaggaccaaaatacaatgttccgactaagcttgtgaagttgtttgcatcaggcaa |
100 |
Q |
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| T |
33755924 |
cagacattataacactggctagaacagatgttctggccttatccggaggaccaaaatacaatgttccgactaagcttgtgaatttgtttgaatcaggtaa |
33755825 |
T |
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| Q |
101 |
tgatgctgcaattttgtatcagaatacttcttttattcttgataatgaattttaccaacaatttcttctcaagagaggtatattg-------cagatcga |
193 |
Q |
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| T |
33755824 |
tggtgctgcatttttggattagaatacttcttttatttt------------------acaaattcttcttaagaaatgtatattgtatattgcagatcga |
33755743 |
T |
|
| Q |
194 |
tcagaaacttactttggttaaatcaacaagtccttttgtgtctaattttgcttcaaatggtgataagtttgttaagagttttgcaactgctatgataaag |
293 |
Q |
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| T |
33755742 |
tcaaaaacttactttggataaatcaacaagtctttttgtgtctaattttgcttcaaatggcgagaagtttgttaataattttgcaactgctatgataaag |
33755643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 147 - 296
Target Start/End: Original strand, 33755247 - 33755396
Alignment:
| Q |
147 |
gaattttaccaacaatttcttctcaagagaggtatattgcagatcgatcagaaacttactttggttaaatcaacaagtccttttgtgtctaattttgctt |
246 |
Q |
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| T |
33755247 |
gaattttacaaacagattcttctgaagagatgtatatagcaggttgataagcaacttgctttggataaatcaacaagtcattttgtgtctaattttactt |
33755346 |
T |
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| Q |
247 |
caaatggtgataagtttgttaagagttttgcaactgctatgataaagatg |
296 |
Q |
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| T |
33755347 |
caaatggtgataagtttgttaagtgttttgcaaccgctatgataaagatg |
33755396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33764186 - 33764120
Alignment:
| Q |
1 |
cagacatcttaacacttgctagaagagatgttttggccttatccggaggaccaaaatacaatgttcc |
67 |
Q |
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| T |
33764186 |
cagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcc |
33764120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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