View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15823_low_35 (Length: 352)
Name: NF15823_low_35
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_35 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 142823 - 142477
Alignment:
| Q |
1 |
ttcaactaataacacccctctgtgtaattcctccaaaacaaacataggaatttgattttcaagcagcaacaaatctctctgtgtcattttgtaaatccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
142823 |
ttcaactaataacacccctctgtgtaattcctccaaaacaaacatgggaatttgattttcaagcagcaacaaatctctttgtgtcattttgtaaatccat |
142724 |
T |
|
| Q |
101 |
gatgttttaaacatgaaatcattttcctgttcagattctttagcttttctcnnnnnnngttccattatgaaaactgagtctaacaaaatcatttccaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
142723 |
gatgttttaaacatgaaatcattttcctgttcagattctttaacttttctcaaaaaaagttccattatgaaaactgagtctaacaaaatcatttccaaaa |
142624 |
T |
|
| Q |
201 |
acttctcatccttacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttg |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
142623 |
acttctcatccgtacaaagttcttgtttggaataacaattacaaatattttttcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttg |
142524 |
T |
|
| Q |
301 |
tttattagataaacgtttccaaaatgcatgaaaatacctttgcttct |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
142523 |
tttattagataaacgtttccaaaatgcatgaaaatacctttgtttct |
142477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 107055 - 107153
Alignment:
| Q |
53 |
tgattttcaagcagcaacaaatctctctgtgtcattttgtaaatccatgatgttttaaacatgaaatcattttcctgttcagattctttagcttttctc |
151 |
Q |
| |
|
||||||||||| || ||||||||||| ||| | |||||||||||||||||| | |||||| |||| |||||| ||||||||| || | ||||||| |
|
|
| T |
107055 |
tgattttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttgattttctc |
107153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 45960853 - 45961190
Alignment:
| Q |
1 |
ttcaactaataacacccctctgtgtaattcctccaaaacaaacataggaatttgattttcaagcagcaacaaatctctctgtgtcattttgtaaatccat |
100 |
Q |
| |
|
|||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||| |
|
|
| T |
45960853 |
ttcacctaataacacccttttgtgtaattcctccaaaacaaacataggaatttgattttcaagcagcaacaaatctatttgtgtgattttgtaa-tccat |
45960951 |
T |
|
| Q |
101 |
gatgttttaaacatgaaatcattttcctgttcagattctttagcttttctcnnnnnnngttccattatgaaaactgagtctaacaaaatcatttccaaaa |
200 |
Q |
| |
|
| ||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45960952 |
gttgt---aaacatgaaatcatttttctgttcagattctttagcttttctcaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaa |
45961048 |
T |
|
| Q |
201 |
acttctcatccttacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttg |
300 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45961049 |
acttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctattttcttcaagaaaagctttatattctaccaaagctaaagtttg |
45961148 |
T |
|
| Q |
301 |
tttattagataaacgtttccaaaatgcatgaaaatacctttg |
342 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| || ||||| |
|
|
| T |
45961149 |
tttatttgacaaacgtttccaaaatgcatgaaagtagctttg |
45961190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 100 - 305
Target Start/End: Complemental strand, 297930 - 297724
Alignment:
| Q |
100 |
tgatgttttaaacatgaaatcattttcctgttcagattctttagcttttctcnnnnnnngt-tccattatgaaaactgagtctaacaaaatcatttccaa |
198 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
297930 |
tgatgttgtaaacatgaaatcatctttctgttcagattctttagcttttctcaaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaa |
297831 |
T |
|
| Q |
199 |
aaacttctcatccttacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtt |
298 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
297830 |
aagcttctcatccttgcaaagttcttgtttggaataaaaattaccaatattttctctgttttcttcaagaaaagctttatattgtaccaaagctaaagtt |
297731 |
T |
|
| Q |
299 |
tgtttat |
305 |
Q |
| |
|
||||||| |
|
|
| T |
297730 |
tgtttat |
297724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 298209 - 298107
Alignment:
| Q |
1 |
ttcaactaataacacccctctgtgtaattcctccaaaacaaacataggaatttgattttcaagcagcaacaaatctctctgtgtcattttgtaaatccat |
100 |
Q |
| |
|
|||| ||||||||| || | |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
298209 |
ttcacctaataacagccttttgtgtaattcctccaaaacaaacataagaatttgattttcaagcagcaagaaa--tctctgtgtgattttgtaaatccat |
298112 |
T |
|
| Q |
101 |
gatgt |
105 |
Q |
| |
|
||||| |
|
|
| T |
298111 |
gatgt |
298107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 342
Target Start/End: Original strand, 27123741 - 27123916
Alignment:
| Q |
161 |
tccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatccttacaaagttcttgtttggaataacaattacaaatattttctcggtttt |
260 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||||| || || | |||| |||| | ||||||||||| |||| |||||||| | ||||| |
|
|
| T |
27123741 |
tccatgatgaaaactgagtctaacaaaatatattccacaaactgatccaccatccaaacttctggcttggaataacagttacttatattttcactgtttt |
27123840 |
T |
|
| Q |
261 |
cttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataaacgtttccaaaatgcatgaaaatacctttg |
342 |
Q |
| |
|
|||||| |||||||||||| || ||||||| |||||||| ||||||| ||||||||||| |||||| ||| |||| |
|
|
| T |
27123841 |
attcaaggaaagctttatatcgtcccaaagc------ctgtttatttgataaacatttccaaaatgaatgaaagtacttttg |
27123916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University