View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_38 (Length: 337)
Name: NF15823_low_38
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 8300653 - 8300886
Alignment:
| Q |
24 |
atttcaactctgacactttttgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatc |
123 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8300653 |
atttcaactctgatactttctgagttcccttttaattccactctatcctccatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatc |
8300752 |
T |
|
| Q |
124 |
taacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctcgaattgtttctc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8300753 |
taacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctcgaattgtttctc |
8300852 |
T |
|
| Q |
224 |
tttttccataaatttaattagctcagccaacaca |
257 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
8300853 |
tttttccataaatttaattagctcagccaacaca |
8300886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 8297075 - 8297308
Alignment:
| Q |
24 |
atttcaactctgacactttttgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatc |
123 |
Q |
| |
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||||||||||||| ||||| | |||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| | |||||||||| ||||| |
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| T |
8297075 |
atttcaactctgatactttctaagttcccttttaattccattctatcctccatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatc |
8297174 |
T |
|
| Q |
124 |
taacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctcgaattgtttctc |
223 |
Q |
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||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||| | |
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| T |
8297175 |
taataaacaccaaagaattatccatcacagccaccttaattatcatccatttttcatccagattatccagattttctcccttcttctccaattgtttcgc |
8297274 |
T |
|
| Q |
224 |
tttttccataaatttaattagctcagccaacaca |
257 |
Q |
| |
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||||||||||||| || ||||||||||||||||| |
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| T |
8297275 |
tttttccataaatgtatttagctcagccaacaca |
8297308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 18279571 - 18279339
Alignment:
| Q |
25 |
tttcaactctgacactttttgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatct |
124 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||||||| |||||||| || |||||| |||||||| |||||||||||||||||| |||||||||||| |
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| T |
18279571 |
tttcaactttgacactttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaaaattcagcgtaaagcttttgatatatcc |
18279472 |
T |
|
| Q |
125 |
aacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctcgaattgtttctct |
224 |
Q |
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|| | || |||| |||||| ||| |||| || ||||||||||||| | | |||||| ||||||||||||| |||||||||| ||||| || ||| |
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| T |
18279471 |
aatatacgtcaaaatattatcaaactttgccacattgattatcatccattgtacatcaagattatccagattttcaaccttcttctccaattgattatct |
18279372 |
T |
|
| Q |
225 |
ttttccataaatttaattagctcagccaacaca |
257 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
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|
| T |
18279371 |
ttttccataaatttatttagctcagccaacaca |
18279339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 1145277 - 1145428
Alignment:
| Q |
24 |
atttcaactctgacactttttgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatc |
123 |
Q |
| |
|
||||||| ||||| ||||| | |||||||||||||||||| |||||||| || | ||||||||||||| ||||||||||| |||||| |||| ||| || |
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| T |
1145277 |
atttcaattctgatactttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttc |
1145376 |
T |
|
| Q |
124 |
taacaaacagcaaagaattatccaacacaaccaccttaattatcatccattt |
175 |
Q |
| |
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|||||||| |||| |||||| ||| | |||| || |||||||||||||| |
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| T |
1145377 |
taacaaacgtcaaaatattatcaaacttagccacattgattatcatccattt |
1145428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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