View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_4 (Length: 684)
Name: NF15823_low_4
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 299 - 667
Target Start/End: Original strand, 6024532 - 6024902
Alignment:
| Q |
299 |
aaactgagccctttatgtattacaacctcaaactacgcatgcatgttagtttcactttcatcatcagtggcttatgaatcataataaatgatgtaaccag |
398 |
Q |
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| T |
6024532 |
aaactgagccctttatgtataacaacctcaaactacgcatgcatgttagtttcactttcatcatcagtggcttatgaatcataataaatgatgcaaccag |
6024631 |
T |
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| Q |
399 |
agtatggtcctcaataaatgtggtaaaatatccagcaatgcagaatacac--acaaatttaataccaactagtaaaggcatagtccatattggaagttag |
496 |
Q |
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| T |
6024632 |
aatatggtcctcaataaatgtggtaaaatatccagcaatgcagaatacacacacaaatttaataccaactagtaaaggcatagtccatattggaagttag |
6024731 |
T |
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| Q |
497 |
tgaagatatttctatactattctttaattccttaacaaaccaaccttaagaaagttaacaatagtaccttatttaattctataacaaactcattaaatat |
596 |
Q |
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| T |
6024732 |
tgaagatatttctatactattctttaattctttaacaaaccaaccttaagaaagttaacaatagtaccttatttaattctataacaaactcattaaatat |
6024831 |
T |
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| Q |
597 |
tttatttttgacctacagaactgcatgtctcaggctgatgatttttctacttcaaatgactggctctctgt |
667 |
Q |
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| T |
6024832 |
tttatttttgacctacagaactgcatgtctcaggctgatgatttttctacttcatatgactggctctctgt |
6024902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 6024287 - 6024486
Alignment:
| Q |
15 |
cataggggaacaagggaacctattgtgtatcaacaacattgatcctctattatcagccgattatatgatgcaaccgactacatataattatatattccaa |
114 |
Q |
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| T |
6024287 |
cataggggaacaagggaacctattgtgtatcaacaacattgatcctctattatcagccgattatatgatgcaaccgactacatataattatatattccaa |
6024386 |
T |
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| Q |
115 |
-ccctccctatgtttcgattctttccaacgatttttctttaaccgaagttcattaaccacatcattatattcataagcacattaattgaactattcataa |
213 |
Q |
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| T |
6024387 |
cccctccctatgtttcgattctttccagcgatttttctttaactgaatttcattaaccacatcattatattcataaacacattaattgaactattcataa |
6024486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 6024273 - 6024224
Alignment:
| Q |
45 |
caacaacattgatcctctattatcagccgattatatgatgcaaccgacta |
94 |
Q |
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| T |
6024273 |
caacaacattgatcctctattatcagccgattatatggtgcaaccgacta |
6024224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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