View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_40 (Length: 300)
Name: NF15823_low_40
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 29647740 - 29647466
Alignment:
| Q |
18 |
acacaaatcaccttatcaatctaggcaaatatgtttcagctatgttagctgcaggtgctaaagttgcatatgaaaaagatagaagtgttggatggttatg |
117 |
Q |
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| T |
29647740 |
acacaaatcaccttatcaatctagggaaatatgtttctgctatgttagctgcaggtgctaaagttgcatatgaaaaagatagaagtgttggatggttatg |
29647641 |
T |
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| Q |
118 |
tgttgttgtgatcatgtcaagtgtagcaactttgtaccaattgtattgggactttgtaagggattggggtttgctacaaaggaactccaagaatccttgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29647640 |
tgttgttgtgatcatgtcaagtgtagcaactttgtaccaattgtattgggactttgtaagggattggggtttgctacaaaggaactccaagaatccttgg |
29647541 |
T |
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| Q |
218 |
ttaagaaatgaattgatgcttagaagaaaagctatttactacttgtcaatggtacataaatcatacccctttgct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29647540 |
ttaagaaatgaattgatgcttagaagaaaagctatttactacttgtcaatggtacataaatcatacccttttgct |
29647466 |
T |
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