View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_low_42 (Length: 284)
Name: NF15823_low_42
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 54627363 - 54627618
Alignment:
| Q |
20 |
agtcgtcctgaccgaggcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactg |
119 |
Q |
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| T |
54627363 |
agtcgtcctgaccgaggcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactg |
54627462 |
T |
|
| Q |
120 |
gtgcaaatccttctgtaagtaccaattcttatatccctcgtcaaccaatgttctattgcaagtattgattattttggctctaaatgtatgtgcatgtttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54627463 |
gtgcaaatccttctgtaagtaccaattcttatatccctcgtcaaccaatgttctattgcaagtattgattattttggctctaaatgtatgtgcatgtttt |
54627562 |
T |
|
| Q |
220 |
gaagggaaccatctctttcagcgctgtttcctgcacttcgcacagtgggaaatatt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54627563 |
gaagggaaccatctctttcagcgctgtttcctgcacttcgcacagtgggaaatatt |
54627618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 54861975 - 54861725
Alignment:
| Q |
24 |
gtcctgaccgaggcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtgc |
123 |
Q |
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| T |
54861975 |
gtcctaaccgatgcatggtgggcactctcgtatctttctgatggaacaaatgacaatatccaagcggtgatcgaggcaggtgtatgtggcagactggtgc |
54861876 |
T |
|
| Q |
124 |
aaatccttctgtaagtaccaattcttatatccctcgtcaaccaatgttctattgcaagtattgattattttggctctaaatgtatgtgcatgttttgaag |
223 |
Q |
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| T |
54861875 |
agctccttctgtaagtaccaattcttat-tccctggtcagccaatattctattgcaattattgattattttggctctaaatatatgtgcatgttttgaag |
54861777 |
T |
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| Q |
224 |
ggaaccatctctttcagcgctgtttcctgcacttcgcacagtgggaaatatt |
275 |
Q |
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| | ||||||| ||||| |||| |||||| |||||||| ||||||||||| |
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| T |
54861776 |
gcacccatctccttcagtgctgattcctgtcgttcgcacaatgggaaatatt |
54861725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 36 - 259
Target Start/End: Original strand, 55635600 - 55635824
Alignment:
| Q |
36 |
gcatgttgggcactctcgta-tctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtgcaaatccttctg |
134 |
Q |
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||||| ||||||||||| || | |||||||||||| | ||| || |||||||| |||||| | |||||||||||||| ||||||||| | |||||||| |
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| T |
55635600 |
gcatgctgggcactctcataatatttctgatggaatgaatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctg |
55635699 |
T |
|
| Q |
135 |
taagtaccaattcttatatccctcgtcaaccaatgttctattgcaagtattgattattttggctctaaatgtatgtgcatgttttgaagggaaccatctc |
234 |
Q |
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|||| |||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| | ||||||| |
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| T |
55635700 |
taagcaccaattcttctatccctgttcaaccaattttctattgcaattattgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctc |
55635799 |
T |
|
| Q |
235 |
tttcagcgctgtttcctgcacttcg |
259 |
Q |
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||||| |||||||||||||||||| |
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| T |
55635800 |
cttcagtgctgtttcctgcacttcg |
55635824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 52985653 - 52985416
Alignment:
| Q |
36 |
gcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtgcaaatccttctgt |
135 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||| ||| | ||||||| |||||| ||||||||| ||||||| ||||||||| | | ||||||| |
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| T |
52985653 |
gcatgttgggcaatctcatatctttctgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgtggcagactggtggagctacttctgt |
52985554 |
T |
|
| Q |
136 |
aagtaccaattcttatatccctcgtcaaccaatgttctattgcaagtattgattattttggctctaaatgtatgtgcatgttttgaagggaaccatctct |
235 |
Q |
| |
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||||||||||| || |||||| |||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
52985553 |
aagtaccaatt-ttcgatccctggtcaaccaat-ttttgttgcaattattgattattttggctctaaatgtatgtgcatgttttgaaggcacccatctcc |
52985456 |
T |
|
| Q |
236 |
ttcagcgctgtttcctgcacttcgcacagtgggaaatatt |
275 |
Q |
| |
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||||| |||| | |||| | || ||||| | ||||||||| |
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| T |
52985455 |
ttcagtgctgatacctgtaatttgcacaattggaaatatt |
52985416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 55665355 - 55665116
Alignment:
| Q |
36 |
gcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtgcaaatccttctgt |
135 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||| ||||||||| | | |||| || |
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| T |
55665355 |
gcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagt |
55665256 |
T |
|
| Q |
136 |
aagtaccaattcttatatccctcgtcaaccaatgttctattgcaagtattgattattttggctctaaatgtatgtgcatgttttgaagggaaccatctct |
235 |
Q |
| |
|
||||||||||| || ||||||| || |||||| | | || ||| |||||||||||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
55665255 |
aagtaccaatttttctatccctggtgcaccaataatttgtttcaattattgattattttggctctaaatgtatgcgcatgttttgaaggtacccatctcc |
55665156 |
T |
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| Q |
236 |
ttcagcgctgtttcctgcacttcgcacagtgggaaatatt |
275 |
Q |
| |
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||||| | || ||||| ||||| ||| ||||||||||| |
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| T |
55665155 |
ttcagtgttgactcctgtacttcacacgctgggaaatatt |
55665116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 55659095 - 55658952
Alignment:
| Q |
81 |
atccaagcggtgatcgaggcaggtgtatgtggtagactggtgcaaatccttctgtaagtaccaattcttatatccctcgtcaaccaatgttctattgcaa |
180 |
Q |
| |
|
||||||||||| |||||||| || |||||| |||||| || | ||||| |||||||||||| |||||||||||| |||||||||| |||| |||||| |
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| T |
55659095 |
atccaagcggtaatcgaggctggcatatgtgatagactagtagagctccttttgtaagtaccaaatcttatatccctggtcaaccaattttctgttgcaa |
55658996 |
T |
|
| Q |
181 |
gtattgattattttggctctaaatgtatgtgcatgttttgaagg |
224 |
Q |
| |
|
| ||||||||||||||||||||| || | |||||||||||||| |
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| T |
55658995 |
ttgttgattattttggctctaaatctacgcgcatgttttgaagg |
55658952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 3671789 - 3671703
Alignment:
| Q |
36 |
gcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtg |
122 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
3671789 |
gcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtttgtggcagactggtg |
3671703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 36 - 275
Target Start/End: Original strand, 9889879 - 9890107
Alignment:
| Q |
36 |
gcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtgcaaatccttctgt |
135 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| ||||||||| | ||||| ||| |
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| T |
9889879 |
gcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttgt |
9889978 |
T |
|
| Q |
136 |
aagtaccaattcttatatccctcgtcaaccaatgttctattgcaagtattgattattttggctctaaatgtatgtgcatgttttgaagggaaccatctct |
235 |
Q |
| |
|
|||||||||||||| |||||| || ||| || ||| |||| |||| |||||||||||||| |||||||||||||||||| | || |||| |
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|
| T |
9889979 |
aagtaccaattcttctatccc-----------tgctctgtttcaattatttattaatttggctctaaatgcatgtgcatgttttgaaggaacccttctcc |
9890067 |
T |
|
| Q |
236 |
ttcagcgctgtttcctgcacttcgcacagtgggaaatatt |
275 |
Q |
| |
|
||||| | || ||||||||||||||||| ||||||||||| |
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| T |
9890068 |
ttcagtggtgattcctgcacttcgcacattgggaaatatt |
9890107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 275
Target Start/End: Original strand, 13401768 - 13402019
Alignment:
| Q |
24 |
gtcctgaccgaggcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtgc |
123 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||| ||||| |||| |
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| T |
13401768 |
gtcctgacagatgcatgctgggcactctcttatctttctgatggaacaaatgacaaaatccaagcggtgattgaggcaggtgtatgtggcagactagtgc |
13401867 |
T |
|
| Q |
124 |
aaatccttctgtaagtaccaattcttatatccctcgtcaaccaatgttctattgcaagtattgattattttggctctaaatgtatgtgcatgttttgaag |
223 |
Q |
| |
|
| ||||||||| |||| | |||| | ||| | | | |||| || ||| ||||| |||||||| ||||| |||||||| ||| ||||||| ||| || |
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| T |
13401868 |
agctccttctgtgagtaacgattcatctattcttatttgaccagtgatcttttgcagttattgattgttttgactctaaatttatatgcatgtgttgtag |
13401967 |
T |
|
| Q |
224 |
ggaaccatctctttcagcgctgtttcctgcacttcgcacagtgggaaatatt |
275 |
Q |
| |
|
| | ||||||| ||||| |||| | |||||||||||||| |||||||||||| |
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|
| T |
13401968 |
gcacccatctccttcagtgctgatccctgcacttcgcacggtgggaaatatt |
13402019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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