View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15823_low_5 (Length: 622)

Name: NF15823_low_5
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15823_low_5
NF15823_low_5
[»] chr1 (15 HSPs)
chr1 (14-331)||(12175169-12175486)
chr1 (50-270)||(12188179-12188394)
chr1 (51-270)||(12182175-12182389)
chr1 (329-440)||(12175521-12175632)
chr1 (505-604)||(12175694-12175793)
chr1 (503-604)||(12183197-12183298)
chr1 (173-232)||(12149469-12149528)
chr1 (329-380)||(13321741-13321792)
chr1 (174-231)||(12146282-12146339)
chr1 (508-579)||(12188930-12188998)
chr1 (46-146)||(12163812-12163911)
chr1 (547-582)||(12175766-12175801)
chr1 (329-380)||(51590457-51590508)
chr1 (329-379)||(27687911-27687961)
chr1 (551-579)||(12189006-12189034)
[»] chr4 (5 HSPs)
chr4 (328-376)||(40592781-40592829)
chr4 (329-379)||(24100787-24100837)
chr4 (329-372)||(27587316-27587359)
chr4 (329-372)||(35929045-35929088)
chr4 (339-379)||(24100884-24100924)
[»] scaffold0023 (1 HSPs)
scaffold0023 (329-380)||(112893-112944)
[»] chr7 (3 HSPs)
chr7 (329-374)||(10674156-10674201)
chr7 (329-374)||(47612323-47612368)
chr7 (329-373)||(48948978-48949022)
[»] chr8 (5 HSPs)
chr8 (329-380)||(43932119-43932170)
chr8 (329-380)||(34745284-34745335)
chr8 (329-372)||(38298571-38298614)
chr8 (329-380)||(43292595-43292646)
chr8 (329-374)||(29690469-29690514)
[»] chr6 (2 HSPs)
chr6 (329-380)||(33127856-33127907)
chr6 (329-379)||(9343148-9343198)
[»] chr5 (5 HSPs)
chr5 (329-379)||(13128221-13128271)
chr5 (339-379)||(10228091-10228131)
chr5 (330-372)||(35318585-35318627)
chr5 (328-372)||(13278921-13278965)
chr5 (344-376)||(43221642-43221674)
[»] chr3 (4 HSPs)
chr3 (332-376)||(2544489-2544533)
chr3 (329-380)||(39616981-39617032)
chr3 (329-372)||(44664217-44664260)
chr3 (329-380)||(53703757-53703808)
[»] chr2 (3 HSPs)
chr2 (329-372)||(27311647-27311690)
chr2 (329-374)||(27306744-27306789)
chr2 (329-374)||(28143815-28143860)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 12175169 - 12175486
Alignment:
Q  14 caaagggaaaagataagaatgaaattttaaataaaatatgtcaaccaaagaatttaatgctttttgttctatttcttcctcatcttgcctataaatacat 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12175169 caaagggaaaagataagaatgaaattttaaataaaaaatgtcaaccaaagaatttaatgctttttgttctatttcttcctcatcttgcctataaatacat 12175268  T
Q  114 aactttcagccacttcattttcatcgatcaatatacaatagtttcaaagtaagttataagaaaatgaattccaaagggttactttttctagctatgctct 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12175269 aactttcagtcacttcattttcatcgatcaatatacaatagtttcaaagtaagttataagaaaatgaattccaaagggttactttttctagctatgctct 12175368  T
Q  214 tggcttccattcttctcatctccgcagctgagaaatctgacaaaaaagatggtaataaatctgttctcaattttcccaacattaattatatatcgcatga 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12175369 tggcttccattcttctcatctccgcagctgagaaatctgacaaaaaagatggtaataaatctgttctcaattttcccaacattaattatataccgcatga 12175468  T
Q  314 tcttactccagtcattat 331  Q
    |||||||||  |||||||    
T  12175469 tcttactccgttcattat 12175486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 50 - 270
Target Start/End: Original strand, 12188179 - 12188394
Alignment:
Q  50 tatgtcaaccaaagaatttaatgctttttgttctatttcttcctcatcttgcctataaatacataactttcagccacttcattttcatcgatcaatatac 149  Q
    ||||||||| || |||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||    
T  12188179 tatgtcaacgaaggaatttaatgttttttgttctatttctttctcatgttacctataaatacataactttcagacacttcattttcatcgatca--atac 12188276  T
Q  150 aatagtttcaaagtaagttataagaaaatgaattccaaagggttactttttctagctatgctcttggcttccattcttctcatctccgcagctgagaaat 249  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||||||||  ||||| |  |||||||||| ||||||||||   | ||||||||||    
T  12188277 aatagtttcacaataagctataagaaaatgaattccaaagggttactttttcttactatgttgctggcttccatccttctcatct---ctgctgagaaat 12188373  T
Q  250 ctgacaaaaaagatggtaata 270  Q
    |||| ||||||||||||||||    
T  12188374 ctgataaaaaagatggtaata 12188394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 51 - 270
Target Start/End: Original strand, 12182175 - 12182389
Alignment:
Q  51 atgtcaaccaaagaatttaatgctttttgttctatttcttcctcatcttgcctataaatacataactttcagccacttcattttcatcgatcaatataca 150  Q
    |||||||| || |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||  |||||    
T  12182175 atgtcaacgaaggaatttaatgttttttgttctatttctttctcatgttgcctataaatacataactttcagacacttcattttcatcgatca--ataca 12182272  T
Q  151 atagtttcaaagtaagttataagaaaatgaattccaaagggttactttttctagctatgctcttggcttccattcttctcatctccgcagctgagaaatc 250  Q
    |||||||||   |||| ||||| |||||||||||||||||||||||||||||  ||||| |  |||||||||| ||||||||||   | |||||||||||    
T  12182273 atagtttcacgataagctataacaaaatgaattccaaagggttactttttcttactatgttgctggcttccatccttctcatct---ctgctgagaaatc 12182369  T
Q  251 tgacaaaaaagatggtaata 270  Q
    ||| ||||||||||||||||    
T  12182370 tgataaaaaagatggtaata 12182389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 329 - 440
Target Start/End: Original strand, 12175521 - 12175632
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaattggttaaacacatgttgtactctcatgaggacaaactatccctcgtgctc 428  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  12175521 tatatttataacaagatacattaattgttcaatgaacctaaaaagttaattggttaaacacatgttgtactctcacgaggacaaactatcccttgtgctc 12175620  T
Q  429 cccatcaataaa 440  Q
    ||||||||||||    
T  12175621 cccatcaataaa 12175632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 505 - 604
Target Start/End: Original strand, 12175694 - 12175793
Alignment:
Q  505 aggtaaagaaaatgggatagacgaaagcaagtatggctattatggaggttggggttacggcggtccatggcgtggaggttggggttatggcggtccatgg 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12175694 aggtaaagaaaatgggatagacgaaagcaagtatggctattatggaggttggggttacggcggtccatggcgtggaggttggggttatggcggtccatgg 12175793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 503 - 604
Target Start/End: Original strand, 12183197 - 12183298
Alignment:
Q  503 gtaggtaaagaaaatgggatagacgaaagcaagtatggctattatggaggttggggttacggcggtccatggcgtggaggttggggttatggcggtccat 602  Q
    |||| ||||| ||||||| | || |||||||| |||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||| || | |||||    
T  12183197 gtagataaagcaaatggggtcgatgaaagcaaatatgactatgatggaggtttgggttacggtggtccatggcgtggaggttggggttacggtgatccat 12183296  T
Q  603 gg 604  Q
    ||    
T  12183297 gg 12183298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 12149469 - 12149528
Alignment:
Q  173 gaaaatgaattccaaagggttactttttctagctatgctcttggcttccattcttctcat 232  Q
    ||||||||||||||| | ||||||||||||||| ||| | ||||||||||| ||||||||    
T  12149469 gaaaatgaattccaaggcgttactttttctagccatgttgttggcttccatccttctcat 12149528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 13321792 - 13321741
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaattg 380  Q
    |||||||||||||||||||||||||| ||  ||||||| |||||||||||||    
T  13321792 tatatttataacaagatacattaattattttataaaccaaaaaagttaattg 13321741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 12146339 - 12146282
Alignment:
Q  174 aaaatgaattccaaagggttactttttctagctatgctcttggcttccattcttctca 231  Q
    |||||||||||||| |  |||||||||||||||||| | ||||||||||| |||||||    
T  12146339 aaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctca 12146282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 579
Target Start/End: Original strand, 12188930 - 12188998
Alignment:
Q  508 taaagaaaatgggatagacgaaagcaagtatggctattatggaggttggggttacggcggtccatggcgtgg 579  Q
    ||||| ||||||| |||| |||||||| |||||||||   ||||||||||||||||| ||||| ||||||||    
T  12188930 taaagcaaatggggtagatgaaagcaaatatggctat---ggaggttggggttacggtggtccttggcgtgg 12188998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 12163812 - 12163911
Alignment:
Q  46 aaaatatgtcaaccaaagaatttaatgctttttgttctatttcttcctcatcttgcctataaatacataactttcagccacttcattttcatcgatcaat 145  Q
    ||||||| | ||| ||| ||||||||||| ||  |||||||||| ||||| |||||||||||||||  ||| ||  | ||||||||||||||| ||||||    
T  12163812 aaaatatctgaacaaaacaatttaatgctatta-ttctatttctgcctcaccttgcctataaatacccaacatttggtcacttcattttcatcaatcaat 12163910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 582
Target Start/End: Original strand, 12175766 - 12175801
Alignment:
Q  547 tggaggttggggttacggcggtccatggcgtggagg 582  Q
    ||||||||||||||| ||||||||||||||||||||    
T  12175766 tggaggttggggttatggcggtccatggcgtggagg 12175801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 51590508 - 51590457
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaattg 380  Q
    |||||||||||||||||||||||||| ||| || |||| ||||||| |||||    
T  51590508 tatatttataacaagatacattaattattctatgaaccaaaaaagtcaattg 51590457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 27687911 - 27687961
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaatt 379  Q
    |||||||| || |||||||||||||| ||| |||||| |||||||||||||    
T  27687911 tatatttacaataagatacattaattattctataaacttaaaaagttaatt 27687961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 579
Target Start/End: Original strand, 12189006 - 12189034
Alignment:
Q  551 ggttggggttacggcggtccatggcgtgg 579  Q
    |||||||||||||||||||||||||||||    
T  12189006 ggttggggttacggcggtccatggcgtgg 12189034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 40592781 - 40592829
Alignment:
Q  328 ttatatttataacaagatacattaattgttcaataaacctaaaaagtta 376  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  40592781 ttatatttataacaagatacattaattattctataaacctaaaaagtta 40592829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 24100837 - 24100787
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaatt 379  Q
    |||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  24100837 tatatttataacaagatacattaattattcaatgaatctaaaaagttaatt 24100787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 27587316 - 27587359
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaa 372  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||    
T  27587316 tatatttataacgagatacattaattattcaatgaacctaaaaa 27587359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 35929088 - 35929045
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaa 372  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||    
T  35929088 tatatttataataagatacattaattattctataaacctaaaaa 35929045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 24100884 - 24100924
Alignment:
Q  339 acaagatacattaattgttcaataaacctaaaaagttaatt 379  Q
    |||||||||||||||| |||||| || ||||||||||||||    
T  24100884 acaagatacattaattattcaatgaatctaaaaagttaatt 24100924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 112893 - 112944
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaattg 380  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  112893 tatatttataacaagatacattaattattcaataaatctaaaaagtcaattg 112944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 10674201 - 10674156
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagt 374  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||    
T  10674201 tatatttataacaagatacattaattattcaatgaacctaaaaagt 10674156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 47612368 - 47612323
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagt 374  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||    
T  47612368 tatatttataacgagatacattaattattcaatgaacctaaaaagt 47612323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 48949022 - 48948978
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaag 373  Q
    |||||||||||||||||||||||||| ||| || |||| ||||||    
T  48949022 tatatttataacaagatacattaattattctatgaaccaaaaaag 48948978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 43932119 - 43932170
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaattg 380  Q
    |||||||||||||||||||||||||| |||||| || ||||||||| |||||    
T  43932119 tatatttataacaagatacattaattattcaatgaatctaaaaagtcaattg 43932170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 34745335 - 34745284
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaattg 380  Q
    |||||||||||||||||||||||||| ||| || |||| ||||||| |||||    
T  34745335 tatatttataacaagatacattaattattctatgaaccaaaaaagtcaattg 34745284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 38298571 - 38298614
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaa 372  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||    
T  38298571 tatatttataacgagatacattaattattcaatgaacctaaaaa 38298614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 43292646 - 43292595
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaattg 380  Q
    |||||||||||||||||||||||||| ||| || |||| ||||||| |||||    
T  43292646 tatatttataacaagatacattaattattctatgaaccaaaaaagtcaattg 43292595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 29690514 - 29690469
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagt 374  Q
    ||||||||||| |||||||||||||| ||| || ||||||||||||    
T  29690514 tatatttataataagatacattaattattctatgaacctaaaaagt 29690469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 33127856 - 33127907
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaattg 380  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||| |||||    
T  33127856 tatatttgtaacaagatacattaattattcaataaatctaaaaagtcaattg 33127907  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 9343198 - 9343148
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaatt 379  Q
    |||||||||||||||||||||||||| ||| || || ||||||||| ||||    
T  9343198 tatatttataacaagatacattaattattctatgaatctaaaaagtcaatt 9343148  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 13128271 - 13128221
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaatt 379  Q
    |||||||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  13128271 tatatttataacgagatatattaattattcaataaacataaaaagttaatt 13128221  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 10228131 - 10228091
Alignment:
Q  339 acaagatacattaattgttcaataaacctaaaaagttaatt 379  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  10228131 acaagatacatcaattgttcaataaatctaaaaagttaatt 10228091  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 35318585 - 35318627
Alignment:
Q  330 atatttataacaagatacattaattgttcaataaacctaaaaa 372  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||    
T  35318585 atatttataacgagatacattaattattcaataaacttaaaaa 35318627  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 13278965 - 13278921
Alignment:
Q  328 ttatatttataacaagatacattaattgttcaataaacctaaaaa 372  Q
    ||||||||||||| |||| |||||| | |||||||||||||||||    
T  13278965 ttatatttataacgagatgcattaactattcaataaacctaaaaa 13278921  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 43221642 - 43221674
Alignment:
Q  344 atacattaattgttcaataaacctaaaaagtta 376  Q
    ||||||||||| |||||||||||||||||||||    
T  43221642 atacattaatttttcaataaacctaaaaagtta 43221674  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 2544533 - 2544489
Alignment:
Q  332 atttataacaagatacattaattgttcaataaacctaaaaagtta 376  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||    
T  2544533 atttataacaagatacatcaattattcaatgaacctaaaaagtta 2544489  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 39616981 - 39617032
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaattg 380  Q
    |||||||||||||||||||||||||| ||| || |||| ||||||| |||||    
T  39616981 tatatttataacaagatacattaattattctatgaaccaaaaaagtcaattg 39617032  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 44664260 - 44664217
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaa 372  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||    
T  44664260 tatatttataataagatacattaattattcaatgaacctaaaaa 44664217  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 53703808 - 53703757
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagttaattg 380  Q
    |||||||||||||||||||||||||| ||| || |||| ||||||| |||||    
T  53703808 tatatttataacaagatacattaattattctatgaaccaaaaaagtcaattg 53703757  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 27311647 - 27311690
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaa 372  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||    
T  27311647 tatatttataacaagatacgttaattattcaataaatctaaaaa 27311690  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 27306789 - 27306744
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagt 374  Q
    |||||||| || |||||||||||||| |||||| ||||||||||||    
T  27306789 tatatttacaataagatacattaattattcaatgaacctaaaaagt 27306744  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 28143815 - 28143860
Alignment:
Q  329 tatatttataacaagatacattaattgttcaataaacctaaaaagt 374  Q
    ||||||||||| |||||||||||||| ||| || ||||||||||||    
T  28143815 tatatttataataagatacattaattattctatgaacctaaaaagt 28143860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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