View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15823_low_6 (Length: 578)

Name: NF15823_low_6
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15823_low_6
NF15823_low_6
[»] chr3 (3 HSPs)
chr3 (3-563)||(29073427-29073990)
chr3 (466-563)||(14031194-14031294)
chr3 (478-563)||(14030444-14030532)
[»] chr1 (6 HSPs)
chr1 (467-563)||(40524876-40524975)
chr1 (478-542)||(24210391-24210455)
chr1 (478-542)||(24205609-24205673)
chr1 (478-542)||(45025387-45025451)
chr1 (478-542)||(45030221-45030285)
chr1 (478-542)||(45035019-45035083)
[»] scaffold0655 (2 HSPs)
scaffold0655 (480-563)||(6188-6274)
scaffold0655 (473-563)||(4126-4218)
[»] chr2 (1 HSPs)
chr2 (467-544)||(1586043-1586120)
[»] scaffold0134 (2 HSPs)
scaffold0134 (467-563)||(20117-20216)
scaffold0134 (467-563)||(41145-41244)
[»] chr6 (4 HSPs)
chr6 (478-542)||(33161623-33161687)
chr6 (467-563)||(16589988-16590088)
chr6 (467-563)||(16605292-16605392)
chr6 (478-542)||(33166409-33166473)
[»] chr4 (1 HSPs)
chr4 (488-563)||(53386295-53386373)


Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 3 - 563
Target Start/End: Original strand, 29073427 - 29073990
Alignment:
Q  3 catgtccaagaatatggatcccaccaaggattgaaatgagtactgacaaagggatcatataactttgcatacattaaagtacaagggatatagtggagac 102  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29073427 catgtccacaaatatggatcccaccaaggattgaaatgagtactgacaaagggatcatataactttgcatacattaaagtacaagggatatagtggagac 29073526  T
Q  103 ctatgagcaaatttgtaacatgttcctgactaacttacggttgaaatttaaatatcatgtggttgtatagactataggttatcattgcatgtgttcacag 202  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29073527 ctatgagcaaatttgtaacatgttcctgactaacttatggttgaaatttaaatatcatgtggttgtagagactataggttatcattgcatgtgttcacag 29073626  T
Q  203 tatgaatgaccttcattttaggacactgatttaatttaattagaaacatattcacatgctatgatcttatgtcttttatttcaattgtcactctcaaaca 302  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  29073627 tatgaatgaccttcattttaggtcactgatttaatttaattggaaacatattcacatgctatgatctcatgtcttttatttcaattgccactctcaaaca 29073726  T
Q  303 tatatcttctctacaataaggccattttattcacatgctccagagtccataccacataacctagcttagatatacagaaaataaatttggtgcctaaata 402  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29073727 tatatcttctttacaataaggccattttattcacatgctccagagtccataacacataacctagcttagatatacagaaaataaatttggtgcctaacta 29073826  T
Q  403 atttgatgatatcactaattccacacatttacatgtgatgatttctgtcattttgatcggacaataagacaatggaatgcttgtgtttctcattcatcta 502  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  29073827 atttgatgatatcactaattccacacatatacatgtgatgatttctgtcattttgatcggacaataagacaatggaatgcttttgtttctcattcatctg 29073926  T
Q  503 aatagaatatatataacaattgtgtaatgtttggtcaactatc---ttatgatacaacataatt 563  Q
    ||||||||||||| |||||||||||||||||||||||||||||   |||||||||||| |||||    
T  29073927 aatagaatatatacaacaattgtgtaatgtttggtcaactatctaattatgatacaacttaatt 29073990  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 466 - 563
Target Start/End: Original strand, 14031194 - 14031294
Alignment:
Q  466 ataagacaatggaatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaactatc---ttatgatacaacataat 562  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||||||| ||| | |||||||| |||| |||| ||||   |||||||||||||||||    
T  14031194 ataagataatggaatgcttttgtttctcattcatctgaatagaatatatacaactactgtgtaatatttgatcaattatctaattatgatacaacataat 14031293  T
Q  563 t 563  Q
    |    
T  14031294 t 14031294  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 478 - 563
Target Start/End: Complemental strand, 14030532 - 14030444
Alignment:
Q  478 aatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaactatc---ttatgatacaacataatt 563  Q
    |||||||||||||||||||||||| ||||||| ||||| ||| |||||||||  ||| ||||||||||   ||| ||||||||||||||    
T  14030532 aatgcttgtgtttctcattcatctgaatagaaaatatagaactattgtgtaacatttagtcaactatctaattaagatacaacataatt 14030444  T

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Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 467 - 563
Target Start/End: Original strand, 40524876 - 40524975
Alignment:
Q  467 taagacaatggaatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaactatc---ttatgatacaacataatt 563  Q
    ||||| ||||||||||||  ||||||||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||   ||||||||||||||||||    
T  40524876 taagataatggaatgcttccgtttctcattcatctgaatagaatatatagaactattgtgtaacgtttggtcaactatctaattatgatacaacataatt 40524975  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 542
Target Start/End: Complemental strand, 24210455 - 24210391
Alignment:
Q  478 aatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaact 542  Q
    ||||||||  ||||||||| |||| ||||||||||||| ||| ||||||||| || |||||||||    
T  24210455 aatgcttgcctttctcattgatctgaatagaatatatacaactattgtgtaacgtctggtcaact 24210391  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 542
Target Start/End: Complemental strand, 24205673 - 24205609
Alignment:
Q  478 aatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaact 542  Q
    ||||||||  ||||||||| |||| ||||||||||||| ||| ||||| ||| || |||||||||    
T  24205673 aatgcttgcctttctcattgatctgaatagaatatatacaactattgtataacgtctggtcaact 24205609  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 542
Target Start/End: Complemental strand, 45025451 - 45025387
Alignment:
Q  478 aatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaact 542  Q
    ||||||||  ||||||||| |||| ||||||||||||| ||| ||||||||| || || ||||||    
T  45025451 aatgcttgcctttctcattgatctgaatagaatatatacaactattgtgtaacgtctgatcaact 45025387  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 542
Target Start/End: Complemental strand, 45030285 - 45030221
Alignment:
Q  478 aatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaact 542  Q
    ||||||||  ||||||||| |||||||||||||||||| |||  |||||||| || || ||||||    
T  45030285 aatgcttgcctttctcattgatctaaatagaatatatacaactgttgtgtaacgtctgatcaact 45030221  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 542
Target Start/End: Complemental strand, 45035083 - 45035019
Alignment:
Q  478 aatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaact 542  Q
    ||||||||  ||||||||| |||| ||||||||||||| |||  |||||||| || |||||||||    
T  45035083 aatgcttgcctttctcattgatctgaatagaatatatacaactgttgtgtaacgtctggtcaact 45035019  T

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Target: scaffold0655 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 480 - 563
Target Start/End: Original strand, 6188 - 6274
Alignment:
Q  480 tgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaactat---cttatgatacaacataatt 563  Q
    |||||||||||||||||||||| || |||||||||| ||| ||||||||| |||| |||||||||   |||||||||||||||||||    
T  6188 tgcttgtgtttctcattcatctgaaaagaatatatacaactattgtgtaacgtttagtcaactatctacttatgatacaacataatt 6274  T

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Target: scaffold0655; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 473 - 563
Target Start/End: Original strand, 4126 - 4218
Alignment:
Q  473 aatggaatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaactat---cttatgatacaacataatt 563  Q
    |||||||||||||||||||| |||||||| ||| ||||||||| ||| ||||||||| |||| |||||||||   |||||||||||||||||||    
T  4126 aatggaatgcttgtgtttcttattcatctgaat-gaatatatacaactattgtgtaacgtttagtcaactatctacttatgatacaacataatt 4218  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 544
Target Start/End: Original strand, 1586043 - 1586120
Alignment:
Q  467 taagacaatggaatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaactat 544  Q
    ||||| ||||||||  ||| ||||||||||||||  |||||||||||||||||  |||||||| ||||||||||||||    
T  1586043 taagataatggaatttttgcgtttctcattcatccgaatagaatatatataactgttgtgtaacgtttggtcaactat 1586120  T

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Target: scaffold0134 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 563
Target Start/End: Complemental strand, 20216 - 20117
Alignment:
Q  467 taagacaatggaatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatg-tttggtcaactatc---ttatgatacaacataat 562  Q
    ||||| ||| |||||| || ||||||||||||||| ||||||||||||| | ||| ||||||| | ||||||||||||||   |||||||||||||||||    
T  20216 taagataatagaatgcctgagtttctcattcatctgaatagaatatatacatcaa-tgtgtaacgttttggtcaactatctaattatgatacaacataat 20118  T

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Target: scaffold0134; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 563
Target Start/End: Complemental strand, 41244 - 41145
Alignment:
Q  467 taagacaatggaatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatg-tttggtcaactatc---ttatgatacaacataat 562  Q
    ||||| ||| |||||| || ||||||||||||||| ||||||||||||| | ||| ||||||| | ||||||||||||||   |||||||||||||||||    
T  41244 taagataatagaatgcctgagtttctcattcatctgaatagaatatatacaccaa-tgtgtaacgttttggtcaactatctaattatgatacaacataat 41146  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 542
Target Start/End: Complemental strand, 33161687 - 33161623
Alignment:
Q  478 aatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaact 542  Q
    ||||||||  ||||||||| |||| ||||||||||||| ||| ||||||||| || |||||||||    
T  33161687 aatgcttgcctttctcattgatctgaatagaatatatacaactattgtgtaacgtctggtcaact 33161623  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 563
Target Start/End: Complemental strand, 16590088 - 16589988
Alignment:
Q  467 taagacaatggaatgcttgtgtttctcattcatctaaatagaatatatata--acaattgtgtaatgtttggtcaactatc---ttatgatacaacataa 561  Q
    ||||| |||||||||  ||  ||||||||| |||| | |||||||||||||  ||||| |||||| |||||||||||||||   |||||||||| |||||    
T  16590088 taagataatggaatgaatggatttctcattgatctgagtagaatatatatacaacaat-gtgtaacgtttggtcaactatctaattatgatacagcataa 16589990  T
Q  562 tt 563  Q
    ||    
T  16589989 tt 16589988  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 563
Target Start/End: Original strand, 16605292 - 16605392
Alignment:
Q  467 taagacaatggaatgcttgtgtttctcattcatctaaatagaatatatata--acaattgtgtaatgtttggtcaactatc---ttatgatacaacataa 561  Q
    ||||| |||||||||  ||  ||||||||| |||| | |||||||||||||  ||||| |||||| |||||||||||||||   |||||||||| |||||    
T  16605292 taagataatggaatgaatggatttctcattgatctgagtagaatatatatacaacaat-gtgtaacgtttggtcaactatctaattatgatacagcataa 16605390  T
Q  562 tt 563  Q
    ||    
T  16605391 tt 16605392  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 542
Target Start/End: Complemental strand, 33166473 - 33166409
Alignment:
Q  478 aatgcttgtgtttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaact 542  Q
    ||||||||  ||||||||| |||| ||||||||||||| ||| ||||||||| || | |||||||    
T  33166473 aatgcttgcctttctcattgatctgaatagaatatatacaactattgtgtaacgtctagtcaact 33166409  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 563
Target Start/End: Original strand, 53386295 - 53386373
Alignment:
Q  488 tttctcattcatctaaatagaatatatataacaattgtgtaatgtttggtcaactatc---ttatgatacaacataatt 563  Q
    |||||||| ||| | ||||||||||||| ||| | | ||||| |||||||||||||||   ||||||||||| ||||||    
T  53386295 tttctcatccatgtgaatagaatatatacaactactatgtaacgtttggtcaactatctagttatgatacaatataatt 53386373  T

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