View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15823_low_7 (Length: 564)

Name: NF15823_low_7
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15823_low_7
NF15823_low_7
[»] scaffold0197 (2 HSPs)
scaffold0197 (31-546)||(30353-30873)
scaffold0197 (1-33)||(28331-28363)
[»] chr7 (4 HSPs)
chr7 (183-546)||(21317073-21317435)
chr7 (1-153)||(21316831-21316983)
chr7 (1-114)||(21314046-21314159)
chr7 (431-532)||(3930242-3930343)
[»] chr2 (1 HSPs)
chr2 (427-546)||(13576090-13576209)
[»] chr8 (5 HSPs)
chr8 (430-546)||(43479941-43480057)
chr8 (432-546)||(38799242-38799356)
chr8 (432-546)||(38822161-38822275)
chr8 (431-546)||(26591914-26592029)
chr8 (431-546)||(25865446-25865561)
[»] chr5 (4 HSPs)
chr5 (432-546)||(12531239-12531353)
chr5 (432-546)||(12547266-12547380)
chr5 (433-546)||(9866925-9867038)
chr5 (423-546)||(9894390-9894510)
[»] chr4 (2 HSPs)
chr4 (431-544)||(34748501-34748614)
chr4 (431-544)||(24860292-24860405)


Alignment Details
Target: scaffold0197 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 31 - 546
Target Start/End: Original strand, 30353 - 30873
Alignment:
Q  31 taaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagttta-----cgatattgcgcttgagtcttattgaaaagaatcatatgcaaa 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |   |||     | ||||||||||||||||||||||||||||||||||||||||    
T  30353 taaatgaatgaggtgaggacaagtgaagtagttaacagtatcattcattcttatcaccccatattgcgcttgagtcttattgaaaagaatcatatgcaaa 30452  T
Q  126 tgtcgtaatgcaattccgagatatctatnnnnnnnnnnnnnnnnn-ttagagataccttattggttggtttcacatgccacggatcccgatcctatcacc 224  Q
    ||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30453 tgtcgtaatgcaattccgagatatctataaaaaaaaaaaaaaaaaattagagataccttattggttggtttcacatgccacggatcccgatcctatcacc 30552  T
Q  225 cttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcannnnnnnc 324  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  30553 cttcctgcaaagacgcacaaccgttgataactatttccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcatttttttc 30652  T
Q  325 ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaaatattttctttctcttcaatttcttttc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30653 ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaa-tattttctttctcttcaatttcttttc 30751  T
Q  425 aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccg 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30752 aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccg 30851  T
Q  525 gcgaccggaggagtgaagaagc 546  Q
    ||||||||||||||||||||||    
T  30852 gcgaccggaggagtgaagaagc 30873  T

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Target: scaffold0197; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28331 - 28363
Alignment:
Q  1 agggatgtcaaagtgaatggaaaagataagtaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  28331 agggatgtcaaagtgaatggaaaagataagtaa 28363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 183 - 546
Target Start/End: Original strand, 21317073 - 21317435
Alignment:
Q  183 tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21317073 tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc 21317172  T
Q  283 cctttcaccttctcaaattttcccaattcccgcannnnnnncttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatccc 382  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21317173 cctttcaccttctcaaattttcccaattcccgcatttttttcttcaatcttctccgccctataaaacacccaaaacacttcttccaacatccatcatccc 21317272  T
Q  383 aataacatctcaaaatattttctttctcttcaatttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca 482  Q
    ||||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21317273 aataacatctc-aaatattttctttctctcagttttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca 21317371  T
Q  483 cgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagc 546  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21317372 cgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagc 21317435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 21316831 - 21316983
Alignment:
Q  1 agggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacgatattgcgcttgagt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  21316831 agggatgtcaaagtgaatggaacagataagtaaatgaatgaggtgaggacaagtgaattagttaacagtatcatgaaagtttatgatattgcgctcgagt 21316930  T
Q  101 cttattgaaaagaatcatatgcaaatgtcgtaatgcaattccgagatatctat 153  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21316931 cttattgaaaagaatcatatacaaatgtcgtaatgcaattccgagatatctat 21316983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 21314046 - 21314159
Alignment:
Q  1 agggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacgatattgcgcttgagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21314046 agggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttatgatattgcgcttgagt 21314145  T
Q  101 cttattgaaaagaa 114  Q
    ||||||||||||||    
T  21314146 cttattgaaaagaa 21314159  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 431 - 532
Target Start/End: Complemental strand, 3930343 - 3930242
Alignment:
Q  431 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 530  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||| |||    
T  3930343 aatggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaacc 3930244  T
Q  531 gg 532  Q
    ||    
T  3930243 gg 3930242  T

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Target: chr2 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 427 - 546
Target Start/End: Original strand, 13576090 - 13576209
Alignment:
Q  427 tcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggc 526  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||    
T  13576090 tcaaaatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggc 13576189  T
Q  527 gaccggaggagtgaagaagc 546  Q
     |||||||||||||||||||    
T  13576190 caccggaggagtgaagaagc 13576209  T

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Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 430 - 546
Target Start/End: Complemental strand, 43480057 - 43479941
Alignment:
Q  430 aaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgac 529  Q
    ||||||| |||||||||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| |||||||| ||||||||||||||||| ||    
T  43480057 aaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccac 43479958  T
Q  530 cggaggagtgaagaagc 546  Q
    |||||||||||||||||    
T  43479957 cggaggagtgaagaagc 43479941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 432 - 546
Target Start/End: Original strand, 38799242 - 38799356
Alignment:
Q  432 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 531  Q
    |||||||||||||| |||||||| ||||||||||||||||| || || || || || || |||||||| || ||||| ||||||||||||||||||||||    
T  38799242 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg 38799341  T
Q  532 gaggagtgaagaagc 546  Q
    |||||||||||||||    
T  38799342 gaggagtgaagaagc 38799356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 432 - 546
Target Start/End: Complemental strand, 38822275 - 38822161
Alignment:
Q  432 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 531  Q
    |||||||||||||| |||||||| ||||||||||||||||| || || || || || || |||||||| || ||||| ||||||||||||||||||||||    
T  38822275 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg 38822176  T
Q  532 gaggagtgaagaagc 546  Q
    |||||||||||||||    
T  38822175 gaggagtgaagaagc 38822161  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 431 - 546
Target Start/End: Original strand, 26591914 - 26592029
Alignment:
Q  431 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 530  Q
    |||||||||||| || ||||| |||||||| ||||||||||| ||||| ||| | || || ||||| || |||||||| |||||||| ||||||||||||    
T  26591914 aatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgacc 26592013  T
Q  531 ggaggagtgaagaagc 546  Q
    || |||||||||||||    
T  26592014 ggcggagtgaagaagc 26592029  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 546
Target Start/End: Original strand, 25865446 - 25865561
Alignment:
Q  431 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 530  Q
    |||||| ||||| || ||||| || ||||||||||||||||| || || ||| | || |||||||| || ||||| ||| ||||||| |||||  | |||    
T  25865446 aatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccacc 25865545  T
Q  531 ggaggagtgaagaagc 546  Q
    || |||||||||||||    
T  25865546 ggcggagtgaagaagc 25865561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 432 - 546
Target Start/End: Original strand, 12531239 - 12531353
Alignment:
Q  432 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 531  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || |||||||| |||||||| ||||    
T  12531239 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg 12531338  T
Q  532 gaggagtgaagaagc 546  Q
    ||||||| |||||||    
T  12531339 gaggagtcaagaagc 12531353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 432 - 546
Target Start/End: Complemental strand, 12547380 - 12547266
Alignment:
Q  432 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 531  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || |||||||| |||||||| ||||    
T  12547380 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg 12547281  T
Q  532 gaggagtgaagaagc 546  Q
    ||||||| |||||||    
T  12547280 gaggagtcaagaagc 12547266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 433 - 546
Target Start/End: Complemental strand, 9867038 - 9866925
Alignment:
Q  433 tggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccgg 532  Q
    ||||| ||||||||||||| || ||||||||||||||||| ||||| ||| | ||  | || ||||| ||||| || ||||||||||||||||| || ||    
T  9867038 tggcatgtaccaaacaaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacggg 9866939  T
Q  533 aggagtgaagaagc 546  Q
    ||||||||||||||    
T  9866938 aggagtgaagaagc 9866925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 546
Target Start/End: Original strand, 9894390 - 9894510
Alignment:
Q  423 tcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctc 522  Q
    |||||||  |||||| ||||||| ||||||||||||||    || ||||| ||||| ||||| || || || ||||| |||||||| || ||||||||||    
T  9894390 tcaatcaccatggcaggtaccaagcaaacagcacgcaat---actggcggcaaagcaccacgaaagcagcttgccaccaaagccgctcgaaaatcagctc 9894486  T
Q  523 cggcgaccggaggagtgaagaagc 546  Q
     |||  |||||  |||||||||||    
T  9894487 tggcagccggaacagtgaagaagc 9894510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 431 - 544
Target Start/End: Original strand, 34748501 - 34748614
Alignment:
Q  431 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 530  Q
    ||||||||||||||| ||||| || ||||||||||| || || ||||| ||| | || ||||| ||||| |||||||| || ||||| |||||||| |||    
T  34748501 aatggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccacc 34748600  T
Q  531 ggaggagtgaagaa 544  Q
    || |||||||||||    
T  34748601 ggtggagtgaagaa 34748614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 544
Target Start/End: Original strand, 24860292 - 24860405
Alignment:
Q  431 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 530  Q
    |||||| ||||| || |||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || |||    
T  24860292 aatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccacc 24860391  T
Q  531 ggaggagtgaagaa 544  Q
    || |||||||||||    
T  24860392 ggcggagtgaagaa 24860405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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