View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15824_high_10 (Length: 207)
Name: NF15824_high_10
Description: NF15824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15824_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 35231887 - 35231717
Alignment:
| Q |
19 |
atagtatgcattaacagcttcactagttcccttccgatatcatcccttttcaaattcttttaaccctccagcccaagagtgaaacttatatagatcgaaa |
118 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35231887 |
atagtatgcaataacagcttcactagttcccttctgatatcttcccttttcaaattcttttaaccctccagcccaagagtgaaacttatatagatcgaaa |
35231788 |
T |
|
| Q |
119 |
caccttaaacatgtataattcgggttcgaacatgtgcttaagttcataaactccttccataagtgaataagc |
190 |
Q |
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| T |
35231787 |
caccttaaatgtgtataattcgggttcgaacatgtgctcaagttcataaact-cttgcataagtgaataagc |
35231717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 35243299 - 35243246
Alignment:
| Q |
19 |
atagtatgcattaacagcttcactagttcccttccgatatcatcccttttcaaa |
72 |
Q |
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| T |
35243299 |
atagtatgcattaacagcttcactagttcccttccgatatcatcccttttcaaa |
35243246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 9665762 - 9665595
Alignment:
| Q |
19 |
atagtatgcattaacagcttcactagttcccttccgatatcatcccttttcaaattcttttaaccctccagcccaagagtgaaacttatatagatcgaaa |
118 |
Q |
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| T |
9665762 |
atagtatgcattaatagcttcactcgttcctttctgatatcttccttctggaaactcttttaatcctcctgcccatgaatgcagcttgtaaagatcaaaa |
9665663 |
T |
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| Q |
119 |
caccttaaacatgtataattcgggttcgaacatgtgcttaagttcataaactccttccataagtgaata |
187 |
Q |
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| T |
9665662 |
caccgcaaacgcgtgtaattagggtttgaacatgtgcttaagttcacgaaat-cttccataagtgaata |
9665595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 13536786 - 13536619
Alignment:
| Q |
19 |
atagtatgcattaacagcttcactagttcccttccgatatcatcccttttcaaattcttttaaccctccagcccaagagtgaaacttatatagatcgaaa |
118 |
Q |
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|||||||||||||| ||||||||| ||||| ||| |||||| ||| | | ||| |||||||| ||||| ||||| || || | ||| || ||||| ||| |
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| T |
13536786 |
atagtatgcattaatagcttcactcgttcctttctgatatcttccttctggaaactcttttaatcctcctgcccatgaatgcagcttgtaaagatcaaaa |
13536687 |
T |
|
| Q |
119 |
caccttaaacatgtataattcgggttcgaacatgtgcttaagttcataaactccttccataagtgaata |
187 |
Q |
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| T |
13536686 |
caccgcaaacgcgtgtaattagggtttgaacatgtgcttaagttcacgaaat-cttccataagtgaata |
13536619 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 6457097 - 6457216
Alignment:
| Q |
19 |
atagtatgcattaacagcttcactagttcccttccgatatcatcccttttcaaattcttttaaccctccagcccaagagtgaaacttatatagatcgaaa |
118 |
Q |
| |
|
|||||||||||| |||||||||||||| | || ||| || ||| | | ||||||| ||| |||||||||||||| ||||| ||||| ||||||||| |
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| T |
6457097 |
atagtatgcattcacagcttcactagtactctcttgatttcttccatctgcaaattcgattagtcctccagcccaagaatgaaatttataaagatcgaaa |
6457196 |
T |
|
| Q |
119 |
caccttaaacatgtataatt |
138 |
Q |
| |
|
|||||||||| ||||||||| |
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| T |
6457197 |
caccttaaacgtgtataatt |
6457216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 6526145 - 6526199
Alignment:
| Q |
71 |
aattcttttaaccctccagcccaagagtgaaacttatatagatcgaaacacctta |
125 |
Q |
| |
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|||||| ||| |||||||||||||||||| || ||||| |||||||||||||||| |
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| T |
6526145 |
aattctgttagccctccagcccaagagtgtaatttatacagatcgaaacacctta |
6526199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 6505267 - 6505371
Alignment:
| Q |
82 |
ccctccagcccaagagtgaaacttatatagatcgaaacaccttaaacatgtataattcgggttcgaacatgtgcttaagttcataaactccttccataag |
181 |
Q |
| |
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|||||| ||||| || || ||||| || ||||||||||||||||||| |||||||| | |||||| | |||||||||||||||| | |||||| ||| |
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| T |
6505267 |
ccctccggcccacgaatgcaacttgtaaagatcgaaacaccttaaacgcgtataatttgagttcgattctatgcttaagttcataaaat-cttccacaag |
6505365 |
T |
|
| Q |
182 |
tgaata |
187 |
Q |
| |
|
|||||| |
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|
| T |
6505366 |
tgaata |
6505371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 6522943 - 6523001
Alignment:
| Q |
77 |
tttaaccctccagcccaagagtgaaacttatatagatcgaaacaccttaaacatgtata |
135 |
Q |
| |
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||||| ||| ||||| |||||| | |||||||| |||||||||||||||||| |||||| |
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| T |
6522943 |
tttaaaccttcagccgaagagtaagacttatattgatcgaaacaccttaaacgtgtata |
6523001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 1828283 - 1828231
Alignment:
| Q |
71 |
aattcttttaaccctccagcccaagagtgaaacttatatagatcgaaacacct |
123 |
Q |
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|||||| ||| |||||| ||||||||||| || ||||| |||||||||||||| |
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|
| T |
1828283 |
aattctgttagccctccggcccaagagtgtaatttataaagatcgaaacacct |
1828231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 6523237 - 6523284
Alignment:
| Q |
140 |
gggttcgaacatgtgcttaagttcataaactccttccataagtgaataa |
188 |
Q |
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||||||||||||||||| ||||||||||| | ||||||| ||||||||| |
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| T |
6523237 |
gggttcgaacatgtgctcaagttcataaaat-cttccatgagtgaataa |
6523284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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