View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15824_high_6 (Length: 285)
Name: NF15824_high_6
Description: NF15824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15824_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 41036304 - 41036575
Alignment:
| Q |
1 |
tggtttctttttgcggcagatcactgtccaatatgtgtaaggatcaaagcagtattttatagtttctgttaaatcacagtcgattggcatatgaatgcaa |
100 |
Q |
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| T |
41036304 |
tggtttctttttgcggtagatcactgtccaatatgtgtaaggatcaaagcagtattttatagtttctgttaaatcacagtcgattggcatatgaatgcaa |
41036403 |
T |
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| Q |
101 |
gaatagtgagtgtagaagtgaaactaaacatataggctatcatacatcaatttctcctttgattaattactggcttttatatgtgcaagctatatgtaca |
200 |
Q |
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| T |
41036404 |
gaatagcgagtgtagatgtgaaactaaacatataggctatcatacatcaatttctcctttgattaattactggcttttatatgtgcaagctatatgtaca |
41036503 |
T |
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| Q |
201 |
cttttaatattacaagtgtaactttggtacgtagatgaaaagggaatgcagaaaatagtggaagtggtgatgatgt |
276 |
Q |
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| T |
41036504 |
cttttaatattacaagtgtaactttg----gtagatgaaaagggaatgcagaaaatagtggaagtggtgatgatgt |
41036575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 41030751 - 41030863
Alignment:
| Q |
38 |
taaggatcaaagcagtattttatagtttctgttaaatcacagtcgattggcatatgaatgcaagaatagtgagtgtaga---agtgaaactaaacatata |
134 |
Q |
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| T |
41030751 |
taaggatcaaagctatagtttgtagtttctattaaatcactgttgattggcatatgaacgcgagtatagtgagtgtggaactagtgaaatcaaacataga |
41030850 |
T |
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| Q |
135 |
ggctatcatacat |
147 |
Q |
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| T |
41030851 |
ggctatcatacat |
41030863 |
T |
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