View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15824_low_1 (Length: 630)
Name: NF15824_low_1
Description: NF15824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15824_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 5 - 614
Target Start/End: Complemental strand, 41764557 - 41763948
Alignment:
| Q |
5 |
accaccacaacaaactcagcacccttcctcatttctcccatcgtccctcatatacccaagccccacctcactaccacccgctgcccgccattcctttctc |
104 |
Q |
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| T |
41764557 |
accaccacaacaaactcagcacccttcctcatttctcccatcgtcccccatactcccacgccccacctcactaccacccgctgcctgccattcctttctc |
41764458 |
T |
|
| Q |
105 |
ccctccttcgttaacaaattaaaattattgtcggtgtcacaattaaatgtcaaccctaccttcttgccaatatccttaacatcatccaccgccgcttgat |
204 |
Q |
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| T |
41764457 |
ccctccttcgttaacaaattaaaattattgccggtgtcacaattaaatgtcaaccctaccttcttgccaatatccttaacatcatccaccgccgcttgat |
41764358 |
T |
|
| Q |
205 |
gttttccatggagaataacccaaatttcccaatcatgattgattgaagaatttgagtttttagaagactcagaagttgaagtacctgcttctttggagtg |
304 |
Q |
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| T |
41764357 |
gctttccatggagaataacccaattttcacaatcatgattgattgaagaatttgagtttttagaagactcagaagttgaagtacctgcttctttggagtg |
41764258 |
T |
|
| Q |
305 |
atttttacctttgcgaaccttaatatgccttttctgttttttcaaaatatgaagaatttgtttacgatcaagttccgacattcgagctacctttttcata |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41764257 |
atttttacctttgcgaaccttaatatgccttttctgttttttcaaaatatgaagaatttgtttacgatcaagttccgacattcgagctacctttttcata |
41764158 |
T |
|
| Q |
405 |
aaaccaacggactgcttgacaaaagcacgttttttcttcttatttacaacttttggagcaacatatacaacaaggtctttttcctttgtagaaacagcaa |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41764157 |
aaaccaacggactgcttgacaaaagcacgttttttcttcttatttacaacttttggagcaacatttacaacaaggtctttttcctttgtagaaacagcaa |
41764058 |
T |
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| Q |
505 |
cgtcaccaacatcatgatgaatgggaatattttttccaacgtgattggctggaagttgagacacccactctaagctccatggaattgtttcattggaaat |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41764057 |
cgtcaccaacatcatgatgaatgggaatattttttccaacgtgattggctggaagttgagacacccactctaagctccatggaattgtttcattggaaat |
41763958 |
T |
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| Q |
605 |
gcattgtcca |
614 |
Q |
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|||| ||||| |
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| T |
41763957 |
gcatggtcca |
41763948 |
T |
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