View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15824_low_2 (Length: 484)
Name: NF15824_low_2
Description: NF15824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15824_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 49352987 - 49352536
Alignment:
| Q |
18 |
cagtaggaaccggcgttaggccaagcaaatcatttttaagaaatgacagatgaaggacattctcgggtatattttcattatgaaatttcaacaattgaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49352987 |
cagtaggaaccggcgttaggccaagcaaatcatttttaagaaatgacagatgaaggacattctcgagtatattttcattatgaaatttcaacaattgaaa |
49352888 |
T |
|
| Q |
118 |
ctcatctcttgcaacatacaatgaaagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352887 |
ctcatctcttgcaacatacaatgaaagatcatgcaccaaatcatgcaatttaaaaccacaaaaaccaccaccaaagtctctaaaattttgaagaaatgat |
49352788 |
T |
|
| Q |
218 |
ctagactgaagctcgtacacaaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352787 |
ctagactgaagctcgtacacaaactgaatgttcatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaa |
49352688 |
T |
|
| Q |
318 |
catgaaaattagaaaaatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagacc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352687 |
catgaaaattagaaaaatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagacc |
49352588 |
T |
|
| Q |
418 |
aggcaaaatgtcatcttctttttgtggtaaattccaaatctcactgtctctg |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49352587 |
aggcaaaatgtcatcttctttttgtggtaaattccaaatctcactgtctctg |
49352536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 32 - 465
Target Start/End: Complemental strand, 49341595 - 49341164
Alignment:
| Q |
32 |
gttaggccaagcaaatcatttttaagaaatgacagatgaaggacattctcgggtatattttcattatgaaatttcaacaattgaaactcatctcttgcaa |
131 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49341595 |
gttaggccaagcaaatcatttttaataaatgacaaatgaaggacattctcgaatatattttcatcatgaaatttcaacaattgaaactcatctcttgcaa |
49341496 |
T |
|
| Q |
132 |
catacaatgaaagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatctagactgaagctc |
231 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||||| || |
|
|
| T |
49341495 |
catacaatgagagatcatgcactaaatcatgcaatttaaatccacaaaaaccaccaccaaagtctacaaaatcttgaataaatgatctagactgaaggtc |
49341396 |
T |
|
| Q |
232 |
gtacacaaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaa |
331 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| | |
|
|
| T |
49341395 |
gtacagaaactgaatgctaatatcttccaaggttttacccatgtttggtggtggaagaaaaccaaatgccacccatagcacactaacatcaaaattaata |
49341296 |
T |
|
| Q |
332 |
aaatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcat |
431 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||| | |
|
|
| T |
49341295 |
aatggaaagtacttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataactt--tttgatagcagacaaaatgtcgt |
49341198 |
T |
|
| Q |
432 |
cttctttttgtggtaaattccaaatctcactgtc |
465 |
Q |
| |
|
| |||||||||||||||| |||||| |||||||| |
|
|
| T |
49341197 |
catctttttgtggtaaatcccaaatttcactgtc |
49341164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 37 - 325
Target Start/End: Complemental strand, 19030927 - 19030639
Alignment:
| Q |
37 |
gccaagcaaatcatttttaagaaatgacagatgaaggacattctcgggtatattttcattatgaaatttcaacaattgaaactcatctcttgcaacatac |
136 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| | |||||| | ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
19030927 |
gccaagcaaatcattttcaataaatgacagatgaagaatattctctgatatattttcattatgaaatttcaacaactgaaactcatcttttgcaacatac |
19030828 |
T |
|
| Q |
137 |
aatgaaagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatctagactgaagctcgtaca |
236 |
Q |
| |
|
|||| |||||| ||||| ||||||||||| | ||| ||||| || || |||||| |||| ||||| |||||| |||||||| ||| |||||| | || |
|
|
| T |
19030827 |
aatgcaagatcgtgcactaaatcatgcaagttaaagtaacaacaaacatcaccaatgtcttcaaaatcttgaaggaatgatcttgaccaaagctcatgca |
19030728 |
T |
|
| Q |
237 |
caaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaa |
325 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| || ||||| | |||||||||||||||||| |||||| |||| |||||||||| |
|
|
| T |
19030727 |
gaaactgaatgctaatatctaccaaggttttacctctgtttggttgtggaagaaaaccaagtgcctcccataacacatgaacatgaaaa |
19030639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 469
Target Start/End: Original strand, 32783282 - 32783733
Alignment:
| Q |
18 |
cagtaggaaccggcgttaggccaagcaaatcatttttaagaaatgacagatgaaggacattctcgggtatattttcattatgaaatttcaacaattgaaa |
117 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
32783282 |
cagtaggaactggtgttacgccaagcaaatcatttttaataaatgacagatgaaggacattctcgagtatattttcattatgaaattcaatcaattgaaa |
32783381 |
T |
|
| Q |
118 |
ctcatctcttgcaacatacaatgaaagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgat |
217 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
32783382 |
ctcatctcttgcaacatacactgcaagatcatgcactaaatcatgcaatttaaatgtacaaataccaccaccaaagtctacaaaatcttgaagaaatgat |
32783481 |
T |
|
| Q |
218 |
ctagactgaagctcgtacacaaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaa |
317 |
Q |
| |
|
|| ||| |||||| | || ||||||||| || || ||||||||||||||||||| |||||||| |||||| |||||| || |||| |||| |||| |
|
|
| T |
32783482 |
cttgaccaaagctcttgcagtaactgaatgctagtaccttccaaggttttacccctgtttggtggcagaagaacaccaagcacctcccaaagcatcctaa |
32783581 |
T |
|
| Q |
318 |
catgaaaattagaaaaatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagacc |
417 |
Q |
| |
|
||| | ||||| ||| ||||| ||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| | | |
|
|
| T |
32783582 |
catccatattagtaaatgtaaagtccttttgaaagagggagaagcaagtaaaacatcgttttaaataagaaggtaactgatcgtaacttaatttgatagc |
32783681 |
T |
|
| Q |
418 |
aggcaaaatgtcatcttctttttgtggtaaattccaaatctcactgtctctg |
469 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
32783682 |
aggcaaaatgtcatcttctttttgaggtaaattccaaatttcactgtctctg |
32783733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 38 - 465
Target Start/End: Complemental strand, 29751356 - 29750932
Alignment:
| Q |
38 |
ccaagcaaatcatttttaagaaatgacagatgaaggacattctcgggtatattttcattatgaaatttcaacaattgaaactcatctcttgcaacataca |
137 |
Q |
| |
|
||||| ||||||||| || |||||||| ||| || ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
29751356 |
ccaagtaaatcatttgtagtaaatgacaaatggagaacattcttaattatattttcattatggaatttcagcaattgaaactcatctcttgcaacatata |
29751257 |
T |
|
| Q |
138 |
atgaaagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatctagactgaagctcgtacac |
237 |
Q |
| |
|
| |||||||||||| ||||||||||||| |||| ||||| || |||| || | |||| |||||| || ||||| || || ||||||| || |
|
|
| T |
29751256 |
gggcaagatcatgcactaaatcatgcaatttaaatacacaaa---cattaccagagacatagaaatcttgaaggaaagatcttgattgtagctcgtgcaa |
29751160 |
T |
|
| Q |
238 |
aaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatca |
337 |
Q |
| |
|
||| ||| | | ||||||||||||||||||| | |||||| ||||||||| |||| ||| |||| |||||| | ||| | ||||| ||| | |
|
|
| T |
29751159 |
aaattgattaccgacatcttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagaataattactaaagtgg |
29751060 |
T |
|
| Q |
338 |
aagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctt |
437 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||||| |||||||||| || ||||| |||||| |||||||||||||| |||||||||| |||||||||| |
|
|
| T |
29751059 |
aagtcttttacaaagagggagaagcaggcaaaacatcgttttaaatatgagggtaattgatcaaaacttaatttgagagcaggcaaaatatcatcttctt |
29750960 |
T |
|
| Q |
438 |
tttgtggtaaattccaaatctcactgtc |
465 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
29750959 |
tttgtggtaaattccaaatctcattgtc |
29750932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 38 - 465
Target Start/End: Complemental strand, 29744323 - 29743899
Alignment:
| Q |
38 |
ccaagcaaatcatttttaagaaatgacagatgaaggacattctcgggtatattttcattatgaaatttcaacaattgaaactcatctcttgcaacataca |
137 |
Q |
| |
|
||||||||||||||| || |||||||| ||| || |||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||||||| | |
|
|
| T |
29744323 |
ccaagcaaatcatttgtagtaaatgacaaatggagaacattctcaattatattttcattatggaattttaacaattgaaactaatctcttgcaacatata |
29744224 |
T |
|
| Q |
138 |
atgaaagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatctagactgaagctcgtacac |
237 |
Q |
| |
|
| |||||||||||| ||||||||||||| ||||| |||| || ||||||| | || | |||||| || ||||| || || ||||||| || |
|
|
| T |
29744223 |
gggcaagatcatgcactaaatcatgcaatttaaatgcacaag---cattaccaaagacaacgaagtcttgaaggaaagatcttgattgtagctcgtgcaa |
29744127 |
T |
|
| Q |
238 |
aaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatca |
337 |
Q |
| |
|
||| | | || | ||||||||||||||||||| | |||||| || |||| | |||| ||| |||| |||||| | |||||| |||| ||| || |
|
|
| T |
29744126 |
aaattaattgccgacatcttccaaggttttacccttgtttggtgatgggagaagatcaagagcctcccaaagcacagtgacatgattattactaaataca |
29744027 |
T |
|
| Q |
338 |
aagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctt |
437 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||||| |||| |||||||| ||||| |||||| |||||||||||| | |||||||||| ||||||| || |
|
|
| T |
29744026 |
aagtcttttacaaagagggagaagcaggcaaaacatcgtttcaaataagacggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttttt |
29743927 |
T |
|
| Q |
438 |
tttgtggtaaattccaaatctcactgtc |
465 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
29743926 |
tttgtggtaaattccaaatctcattgtc |
29743899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 38 - 465
Target Start/End: Original strand, 29601938 - 29602362
Alignment:
| Q |
38 |
ccaagcaaatcatttttaagaaatgacagatgaaggacattctcgggtatattttcattatgaaatttcaacaattgaaactcatctcttgcaacataca |
137 |
Q |
| |
|
||||| ||||||||| || |||||||| ||| || ||||||| ||||||||||||||| | ||||| |||||||||||||||||| |||||||| | |
|
|
| T |
29601938 |
ccaagtaaatcatttgtagtaaatgacaaatggagaacattcttaattatattttcattatggagtttcagcaattgaaactcatctctggcaacatata |
29602037 |
T |
|
| Q |
138 |
atgaaagatcatgcaccaaatcatgcaattcaaatgaacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatctagactgaagctcgtacac |
237 |
Q |
| |
|
| |||||||||||| ||||||||||||| |||| ||||| || |||| || | |||| |||||| || ||||| || || ||||||| || |
|
|
| T |
29602038 |
gggcaagatcatgcactaaatcatgcaatttaaatacacaaa---cattaccagagacatagaaatcttgaaggaaagatcttgattgtagctcgtgcaa |
29602134 |
T |
|
| Q |
238 |
aaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatca |
337 |
Q |
| |
|
||| ||| | | ||||||||||||||||||| | |||||| ||||||||| |||| ||| |||| |||||| | ||| | || || ||| | |
|
|
| T |
29602135 |
aaattgattaccgacatcttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagtataagtaacaaatttg |
29602234 |
T |
|
| Q |
338 |
aagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctt |
437 |
Q |
| |
|
|||| ||||| ||||| |||||||| ||||||||| ||||||||||||| ||||| |||||| |||||||||||| | |||||||||| |||||||||| |
|
|
| T |
29602235 |
aagtctttttcgaagagggagaagcaggcaaaacatcgttttaaataagatggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttctt |
29602334 |
T |
|
| Q |
438 |
tttgtggtaaattccaaatctcactgtc |
465 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
29602335 |
tttgtggtaaattccaaatctcattgtc |
29602362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 35933788 - 35933824
Alignment:
| Q |
126 |
ttgcaacatacaatgaaagatcatgcaccaaatcatg |
162 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
35933788 |
ttgcaacatacaatgcaagatcgtgcaccaaatcatg |
35933824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 344 - 465
Target Start/End: Complemental strand, 35158171 - 35158050
Alignment:
| Q |
344 |
ttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtg |
443 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | || |||||||| || |||||||| | |
|
|
| T |
35158171 |
ttttcaaagagggagaagcaagcaaaacactgttttaaataagaaggtaattgatcataacttaatttgattgctggtaaaatgtcctcgtctttttgcg |
35158072 |
T |
|
| Q |
444 |
gtaaattccaaatctcactgtc |
465 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
35158071 |
gtaaattccaaatctcattgtc |
35158050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 35158474 - 35158345
Alignment:
| Q |
38 |
ccaagcaaatcatttttaagaaatgacagatgaaggacattctcgggtatattttcattatgaaatttcaacaattgaaactcatctcttgcaacataca |
137 |
Q |
| |
|
|||| ||||| ||||||| |||||||| ||| | | |||| || | |||||| ||| |||| | ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
35158474 |
ccaaacaaataatttttagtaaatgacaaatgtaaggcattttcagatatattgtcactatgggagttcaacaattgaaactcgtctcttgaaacataca |
35158375 |
T |
|
| Q |
138 |
atgaaagatcatgcaccaaatcatgcaatt |
167 |
Q |
| |
|
||| ||| |||||||| | ||| ||||||| |
|
|
| T |
35158374 |
atgcaaggtcatgcactagatcgtgcaatt |
35158345 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 18124974 - 18125008
Alignment:
| Q |
128 |
gcaacatacaatgaaagatcatgcaccaaatcatg |
162 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18124974 |
gcaacatacaatgaaagatcatgtaccaaatcatg |
18125008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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