View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15824_low_3 (Length: 459)
Name: NF15824_low_3
Description: NF15824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15824_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 21881227 - 21880792
Alignment:
| Q |
17 |
aaaactttgttaattttggcctaattttgattagcttttagtttatgagatctttcgtttttcatttacggtttatgtttatgtggaacctaatgagaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21881227 |
aaaactttgttaattttggcctaattttggttagcttttagtttatgagatctttcgttcttcatttacggtttatgtttatgtggaacctaatgagaga |
21881128 |
T |
|
| Q |
117 |
gcatctaaaaaatcgagaaactaattccttaggtacttttggagaacatatgaagtattgacacatatgtgaaaaagactcaacattgacatatagacac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21881127 |
gcatctaaaaaatcgagaaactaattccttaggtacttttggagaagatatgaagtattgacacatatgtgaaaaagactcaacactgacatatagacac |
21881028 |
T |
|
| Q |
217 |
ctgtaataatttgagaagaataatgttatttaatgtaaccacatatgttagtatcgtgccgccatacaggccttcaatctaaagtgttggtcaaatcggc |
316 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21881027 |
ctataataatttgagaagaataatgttatttaatgtaaccacatatgttagtatcgtgccgccatacaggccttcaatctaaagtgttggtcaaatcggc |
21880928 |
T |
|
| Q |
317 |
tcgttgtgacttacgtgttgaggacttgccatcttcatttggttcaagatatctttcaaaatacttatcattggtgtagccccaattcctagaccaatga |
416 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21880927 |
tcgttgtgacttacttgttgaggacttgccatcttcatttggttcaagatatctttcaaaatacttatcattggtgtggccccaattcctagaccaatga |
21880828 |
T |
|
| Q |
417 |
gcaagagtacatcataatgcttatagctctgtgctg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21880827 |
gcaagagtacatcataatgcttatagctttgtgctg |
21880792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 11557010 - 11556954
Alignment:
| Q |
205 |
acatatagacacctgtaataatttgagaagaataatgttatttaatgtaaccacata |
261 |
Q |
| |
|
|||| |||||||||||||||||||||||| | | | || ||| |||||||||||||| |
|
|
| T |
11557010 |
acatgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaaccacata |
11556954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University