View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15824_low_5 (Length: 369)

Name: NF15824_low_5
Description: NF15824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15824_low_5
NF15824_low_5
[»] chr8 (11 HSPs)
chr8 (142-351)||(10404856-10405055)
chr8 (147-245)||(38082195-38082294)
chr8 (1-62)||(10404276-10404337)
chr8 (147-229)||(15081454-15081535)
chr8 (147-245)||(2262628-2262725)
chr8 (181-229)||(9295250-9295298)
chr8 (177-245)||(22512155-22512224)
chr8 (157-241)||(12310755-12310838)
chr8 (164-245)||(18180792-18180873)
chr8 (182-245)||(22921959-22922023)
chr8 (157-221)||(37490848-37490910)
[»] chr1 (9 HSPs)
chr1 (147-243)||(50005237-50005332)
chr1 (164-244)||(45085645-45085726)
chr1 (157-238)||(28260269-28260349)
chr1 (180-229)||(13192935-13192984)
chr1 (164-245)||(40804558-40804640)
chr1 (161-238)||(11923788-11923863)
chr1 (188-248)||(12486331-12486392)
chr1 (181-229)||(50335811-50335860)
chr1 (166-245)||(50857553-50857634)
[»] chr6 (4 HSPs)
chr6 (147-229)||(27142601-27142682)
chr6 (166-245)||(2339157-2339237)
chr6 (161-237)||(8568707-8568781)
chr6 (182-248)||(19474728-19474795)
[»] chr4 (7 HSPs)
chr4 (147-245)||(54239490-54239587)
chr4 (147-245)||(15634545-15634644)
chr4 (168-245)||(38223136-38223213)
chr4 (181-222)||(18490424-18490465)
chr4 (166-245)||(13085201-13085280)
chr4 (161-229)||(34943575-34943642)
chr4 (154-245)||(6659439-6659531)
[»] chr2 (6 HSPs)
chr2 (164-239)||(5841205-5841278)
chr2 (166-245)||(8781414-8781493)
chr2 (154-245)||(27952427-27952520)
chr2 (154-245)||(27956263-27956356)
chr2 (165-245)||(33655525-33655608)
chr2 (212-245)||(44675330-44675363)
[»] chr7 (5 HSPs)
chr7 (180-241)||(32052957-32053018)
chr7 (155-245)||(22572497-22572585)
chr7 (164-248)||(4303347-4303433)
chr7 (187-245)||(32936869-32936926)
chr7 (212-245)||(31577291-31577324)
[»] chr5 (6 HSPs)
chr5 (180-247)||(15385061-15385128)
chr5 (147-245)||(35160836-35160932)
chr5 (181-245)||(36844439-36844503)
chr5 (161-238)||(7775315-7775390)
chr5 (147-245)||(19677239-19677338)
chr5 (154-245)||(40778895-40778988)
[»] scaffold0251 (1 HSPs)
scaffold0251 (148-245)||(8264-8361)
[»] scaffold0154 (1 HSPs)
scaffold0154 (194-245)||(28711-28762)
[»] chr3 (5 HSPs)
chr3 (181-241)||(1151119-1151179)
chr3 (210-245)||(20398508-20398543)
chr3 (154-245)||(4580453-4580543)
chr3 (181-245)||(5128824-5128889)
chr3 (212-245)||(43304069-43304102)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 142 - 351
Target Start/End: Original strand, 10404856 - 10405055
Alignment:
Q  142 ccatcatttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccctt 241  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||    
T  10404856 ccatcatttaaccagagctttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatta--------tggtggattccgaaaaccctt 10404947  T
Q  242 atttaatccgtttatttttagatttagcgcttgctaatttctgcgtcatattattgtcattattttgactcggttccaaccttattagttaacttgtgta 341  Q
    |||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||     
T  10404948 atttaatggatttatttttaggtttagcgcttgctaatttctgcgtcatattattgtcattattttgactcggttccaaccttattagt--acttatgtg 10405045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 38082294 - 38082195
Alignment:
Q  147 atttaaccagaactttcgtagcctaagaggcacttttttcattcaat-aaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||| |  ||||||||||||    
T  38082294 atttaaacataactttcgtagcctaagaggcacttttttcattcaataaaaattatcgagaacttttctcaattctgatagattcctgaaacccttattt 38082195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 10404276 - 10404337
Alignment:
Q  1 tgataatctaaatagggttcttttatggtaccaacttaaaaaatagggattggtctcgatat 62  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10404276 tgataatctaaatagggttctttcatggtaccaacttaaaaaatagggattggtctcgatat 10404337  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 15081454 - 15081535
Alignment:
Q  147 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 229  Q
    |||||| || ||||||||||| |||||||||| ||||| | ||||||||||||||||||||| |||||||||||| |||||||    
T  15081454 atttaaacaaaactttcgtagtctaagaggcagtttttcc-ttcaataaaattatcgagaacttttctcaattcttgtggatt 15081535  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 2262628 - 2262725
Alignment:
Q  147 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||| || ||||||||||| |||||| ||| |||| |||||||||||||| || |||||| |||||||||| | || |||| |||||||||||||||    
T  2262628 atttaaacataactttcgtagtctaagatgcagtttt-tcattcaataaaatcatggagaacttttctcaattttagtagattccgaaaacccttattt 2262725  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 9295250 - 9295298
Alignment:
Q  181 tttttcattcaataaaattatcgagaacatttctcaattctggtggatt 229  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  9295250 ttttacattcaataaaattatcgagaacttttctcaattctggtggatt 9295298  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 22512224 - 22512155
Alignment:
Q  177 cacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||| ||||||||||||||| |||||   | ||||||||||||||||||||| ||||||||||||    
T  22512224 cactttttttattcaataaaattattcgagattttctctcaattctggtggatttcggaaacccttattt 22512155  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 12310755 - 12310838
Alignment:
Q  157 aactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccctt 241  Q
    ||||||||||||||||||||||  |||| |||||||||||| |||||| ||| ||||| || | ||||||| | |||||||||||    
T  12310755 aactttcgtagcctaagaggcaactttt-cattcaataaaaatatcgataacttttcttaaatttggtggactccgaaaaccctt 12310838  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 18180873 - 18180792
Alignment:
Q  164 gtagcctaagaggcacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||||||||||||||||||  ||||||||||||||| |||||   | ||||||||||||||||||  | ||||||||||||    
T  18180873 gtagcctaagaggcactttttg-attcaataaaattattcgagattttctctcaattctggtggattctggaaacccttattt 18180792  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 22922023 - 22921959
Alignment:
Q  182 ttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  22922023 ttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 22921959  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 37490910 - 37490848
Alignment:
Q  157 aactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattct 221  Q
    |||||||||| ||||||| ||| |||||||||||||||||| |||||| || ||||| |||||||    
T  37490910 aactttcgtaacctaagatgca-ttttttcattcaataaaa-tatcgaaaaaatttcgcaattct 37490848  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 50005332 - 50005237
Alignment:
Q  147 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttat 243  Q
    |||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||||| || |||||| |||||||||||||    
T  50005332 atttaaacagaactttcgtagcctaagagacacctttt-cattcaataaaattatcgagaacttttctcaattttgatggattccgaaaacccttat 50005237  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 45085645 - 45085726
Alignment:
Q  164 gtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctc--aattctggtggatttcgaaaacccttatt 244  Q
    ||||||||||||||| ||||| ||||||||||| |||| |||||| ||||||  |||||||||||||||||||||| ||||||    
T  45085645 gtagcctaagaggcagttttt-cattcaataaacttattgagaacttttctctcaattctggtggatttcgaaaactcttatt 45085726  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 28260349 - 28260269
Alignment:
Q  157 aactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacc 238  Q
    |||||||||||||||| ||||| ||||  |||||||||||| |||||||||| ||| |||||||| ||||||| ||||||||    
T  28260349 aactttcgtagcctaaaaggcagttttg-cattcaataaaaatatcgagaacttttttcaattctagtggattccgaaaacc 28260269  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 13192984 - 13192935
Alignment:
Q  180 ttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 229  Q
    ||||||||||||||||| |||| |||||  ||||||||||||||||||||    
T  13192984 ttttttcattcaataaatttatagagaagttttctcaattctggtggatt 13192935  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 40804558 - 40804640
Alignment:
Q  164 gtagcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||||||||||||  ||||||||||||||| ||  ||||||   || ||||||||||||||||||| | |||||| |||||    
T  40804558 gtagcctaagaggcaactttttcattcaataatatattcgagacttttctctcaattctggtggattttggaaacccgtattt 40804640  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 11923788 - 11923863
Alignment:
Q  161 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacc 238  Q
    ||||||||||||||| || ||||  ||||||||||||||||| || || ||||| |||||| ||||||| ||||||||    
T  11923788 ttcgtagcctaagagacagttttc-cattcaataaaattatctag-acttttcttaattctagtggattacgaaaacc 11923863  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 12486392 - 12486331
Alignment:
Q  188 ttcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttatttaat 248  Q
    |||||||||||||| |||||   | |||||||| ||||||||| ||||||||||||||||||    
T  12486392 ttcaataaaattattcgagattttctctcaattttggtggattccgaaaacccttatttaat 12486331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 50335811 - 50335860
Alignment:
Q  181 tttttcattcaataaaattatcgagaacatttctcaa-ttctggtggatt 229  Q
    ||||||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  50335811 tttttcatttaataaaattattgagaacttttctcaatttctggtggatt 50335860  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 50857634 - 50857553
Alignment:
Q  166 agcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||||||||  ||||| || |||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  50857634 agcctaagaggcacactttttgatacaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 50857553  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 27142682 - 27142601
Alignment:
Q  147 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 229  Q
    |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||| |||||||||    
T  27142682 atttaaacagaactttcgtagcctaagaggcagttttt-cattcaataaaattatcgaaaacttttctcaattatggtggatt 27142601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 2339237 - 2339157
Alignment:
Q  166 agcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||||||||||  ||||||||||||||||||||||||||   || ||||||||||||||||||||| ||||||||||||    
T  2339237 agcctaagaggcatctttttcattcaataaaattatcgagacttttctctcaattctggtggatttcggaaacccttattt 2339157  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 8568781 - 8568707
Alignment:
Q  161 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaac 237  Q
    ||||||||||||||| || ||||  ||||||||||||||||| || || ||||| |||||| ||||||| |||||||    
T  8568781 ttcgtagcctaagagacagttttc-cattcaataaaattatctag-acttttcttaattctagtggattccgaaaac 8568707  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 19474795 - 19474728
Alignment:
Q  182 ttttcattcaat-aaaattatcgagaacatttctc-aattctggtggatttcgaaaacccttatttaat 248  Q
    |||||||||||| |||||||||||  |  |||||| |||||| ||||||||||||||||||||||||||    
T  19474795 ttttcattcaataaaaattatcga-tatttttctcaaattctagtggatttcgaaaacccttatttaat 19474728  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 54239490 - 54239587
Alignment:
Q  147 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||| || |||||| |||||||||||  || ||||| || |||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||    
T  54239490 atttaaacaaaactttggtagcctaagatacagttttt-caatcaataaaattatcgagaacttttctcaattttggtggattccgaaaacccttattt 54239587  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 15634545 - 15634644
Alignment:
Q  147 atttaaccagaactttcgtagcctaagaggcactttt-ttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||| || ||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||  |||||| |||||  |||||| | ||||| |||||||    
T  15634545 atttaaacataactttcgtagtctaagagacactttttttcattcaataaaataatcgagaaattttctctattctaatggattccaaaaactcttattt 15634644  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 38223213 - 38223136
Alignment:
Q  168 cctaagaggcacttttttcattcaat-aaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||||| ||||||||||||||||| |||||||||||| || |||||||||||| |||||||  | ||||||||||||    
T  38223213 cctaagagacacttttttcattcaataaaaattatcgag-acttttctcaattctagtggattctgtaaacccttattt 38223136  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 18490424 - 18490465
Alignment:
Q  181 tttttcattcaataaaattatcgagaacatttctcaattctg 222  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  18490424 tttttcattcaataaaattatcgagaacttttctcaattctg 18490465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 13085280 - 13085201
Alignment:
Q  166 agcctaagaggcacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||||||| ||||||||| ||||||||||||||| |||||   | |||||||| ||||||||| |||||||||||||||    
T  13085280 agcctaagagacactttttt-attcaataaaattattcgagattttctctcaattttggtggattccgaaaacccttattt 13085201  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 34943642 - 34943575
Alignment:
Q  161 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 229  Q
    |||||||||||||||  | |||||| ||||||||||||||| |||||||||| |||||| |||||||||    
T  34943642 ttcgtagcctaagagaaaatttttt-attcaataaaattatagagaacatttatcaattttggtggatt 34943575  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 6659531 - 6659439
Alignment:
Q  154 cagaactttcgtagcctaagaggcacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||  |||||||||||||||  ||||| ||||| ||||| ||| |||||   | |||||||||||||||||| || ||||||||||||    
T  6659531 cagaacttatgtagcctaagaggcaactttttgattcactaaaactattcgagattttctctcaattctggtggattccggaaacccttattt 6659439  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 5841205 - 5841278
Alignment:
Q  164 gtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccc 239  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  5841205 gtagcctaagag--actattttcattcaataaaattatcgagaacttttctcaattcttgtggattccgaaaaccc 5841278  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 8781414 - 8781493
Alignment:
Q  166 agcctaagaggcacttttttcattcaataaaatta-tcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||||||||||||||||||||||||||||| ||||||     ||||||||||||||||||||| ||||||||||||    
T  8781414 agcctaagaggcacttttttcattcaataaaattattcgagatttactctcaattctggtggatttcg-aaacccttattt 8781493  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 27952520 - 27952427
Alignment:
Q  154 cagaactttcgtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||  ||||||||||||||||  ||||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  27952520 cagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 27952427  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 27956356 - 27956263
Alignment:
Q  154 cagaactttcgtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||  ||||||||||||||||  ||||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  27956356 cagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 27956263  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 33655525 - 33655608
Alignment:
Q  165 tagcctaagaggcact-tttttcattcaataaaatta-tcgagaacatttctcaa-ttctggtggatttcgaaaacccttattt 245  Q
    |||||||||||||||  |||||||||||||||||||| ||||||   | |||||| |||||||||||| || ||||||||||||    
T  33655525 tagcctaagaggcacactttttcattcaataaaattattcgagattttctctcaatttctggtggattccggaaacccttattt 33655608  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 44675363 - 44675330
Alignment:
Q  212 tctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||||||||||||||| |||||||||||||||    
T  44675363 tctcaattctggtggattccgaaaacccttattt 44675330  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 32052957 - 32053018
Alignment:
Q  180 ttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccctt 241  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||    
T  32052957 ttttttcattcaataaaattatagaaaacttttctcaattctggtggatttcggaaaccctt 32053018  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 22572585 - 22572497
Alignment:
Q  155 agaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||||| |||| |||||||||||||||  || | |||||||| ||||||||| |||||||||||| ||||||| || ||||||||||||    
T  22572585 agaactttggtagtctaagaggcactttt--caataaataaaataatcgagaacttttctcaattcttgtggattccggaaacccttattt 22572497  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 4303347 - 4303433
Alignment:
Q  164 gtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttatttaat 248  Q
    ||||||||||||||||  ||||| ||||||||||||||| |||||   | |||||||||| ||||||| ||||||||||||||||||    
T  4303347 gtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctagtggattccgaaaacccttatttaat 4303433  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 32936926 - 32936869
Alignment:
Q  187 attcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||||||||||||||||||  |||||||||| ||||||||| |||||||||||||||    
T  32936926 attcaataaaattatcgagaat-tttctcaattatggtggattccgaaaacccttattt 32936869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 31577324 - 31577291
Alignment:
Q  212 tctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||||||||||||||| ||||||||||||    
T  31577324 tctcaattctggtggatttcggaaacccttattt 31577291  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 15385128 - 15385061
Alignment:
Q  180 ttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttatttaa 247  Q
    ||||||||||||||||||||||||||||| |||||||||| |  ||||||||| |||| |||||||||    
T  15385128 ttttttcattcaataaaattatcgagaacttttctcaattttaatggatttcggaaactcttatttaa 15385061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 35160932 - 35160836
Alignment:
Q  147 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||| ||||||||| |||| |||||||||  ||||  ||||||||||||||||||||||| ||||| |||||||||||| | |  ||||||||||||    
T  35160932 atttaaacagaactttggtagtctaagaggccgtttt--cattcaataaaattatcgagaacttttcttaattctggtggaatcctgaaacccttattt 35160836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 36844503 - 36844439
Alignment:
Q  181 tttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||| |||||||||||||||||| || ||| |||| | |||||| |||||||||||||||    
T  36844503 tttttcatttaataaaattatcgagaactttcctctattccgctggattccgaaaacccttattt 36844439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 7775315 - 7775390
Alignment:
Q  161 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacc 238  Q
    ||||||||||||||| || ||||| ||||||||||||||||| || || ||||| |||||| ||||||| ||||||||    
T  7775315 ttcgtagcctaagagaca-tttttccattcaataaaattatctag-acttttcttaattctagtggattccgaaaacc 7775390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 19677338 - 19677239
Alignment:
Q  147 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||| ||||||||  | | ||||||||||||  |||  ||||||||||||  ||||||   || |||||||||||||||||| |||||||||||||||    
T  19677338 atttaaacagaacttatgcatcctaagaggcacactttgtattcaataaaatattcgagacttttctctcaattctggtggattccgaaaacccttattt 19677239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 40778988 - 40778895
Alignment:
Q  154 cagaactttcgtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||  |||| |||||||||||  ||||| ||||||||||||||| |||||   | |||||||||||||||||| |  ||||||||||||    
T  40778988 cagaacttatgtagtctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctggtggattccagaaacccttattt 40778895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 8361 - 8264
Alignment:
Q  148 tttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaac-atttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||| |||||| |  ||||||||||||| |||||| |  ||||||||||||    
T  8361 tttaaacagaactttcgtagcctaagagacac-tttttcattcaatcaaattttcgagatctttttctcaattctgatggattccagaaacccttattt 8264  T

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Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 28762 - 28711
Alignment:
Q  194 aaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||||||||| ||||||||||||||| |||| || ||||||||||||    
T  28762 aaaattatcgagaacttttctcaattctggtagattccggaaacccttattt 28711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 1151119 - 1151179
Alignment:
Q  181 tttttcattcaataaaa-ttatcgagaacatttctcaattctggtggatttcgaaaaccctt 241  Q
    ||||||||||||||||| |||| |||| | |||||||||||||||||||| |||||||||||    
T  1151119 tttttcattcaataaaaattatagaga-cttttctcaattctggtggattccgaaaaccctt 1151179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 20398543 - 20398508
Alignment:
Q  210 tttctcaattctggtggatttcgaaaacccttattt 245  Q
    |||||||||||||||||||| |||||||||||||||    
T  20398543 tttctcaattctggtggattccgaaaacccttattt 20398508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 4580453 - 4580543
Alignment:
Q  154 cagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||| | ||| ||||| ||||||||  |||||||||||||  |||||||  || |||||||||| |||||||  ||||||||||||||    
T  4580453 cagaacttttgcagcgtaagatgcactttt--cattcaataaaatattcgagaattttctctcaattctagtggattctgaaaacccttattt 4580543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 5128824 - 5128889
Alignment:
Q  181 tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  5128824 tttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 5128889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 43304102 - 43304069
Alignment:
Q  212 tctcaattctggtggatttcgaaaacccttattt 245  Q
    ||||||||||||||||||||| ||||||||||||    
T  43304102 tctcaattctggtggatttcggaaacccttattt 43304069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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