View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15824_low_9 (Length: 259)
Name: NF15824_low_9
Description: NF15824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15824_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 35243281 - 35243530
Alignment:
| Q |
1 |
agctgttaatgcatactatattctgctcgcttgataggtttagaatctggcgatggcaatgttgttactattggaccaaccttaacagctttggaaagta |
100 |
Q |
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| T |
35243281 |
agctgttaatgcatactat--tctgctcgcttgataggtttagaatctggcgatggcaatgttgttactattgggccaaccttaacagctttggaaagta |
35243378 |
T |
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| Q |
101 |
taagagctcaaatgtggtggcatgtaagagaaggaatgaatatgtatgaggtagattttagaccagggtttgcttatcttggtgccagacacaatgtatg |
200 |
Q |
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| T |
35243379 |
taagagctcaaatgtggtggcatgtaagagaaggaatgaatatgtatgaggtagattttagaccagggtttgcttatcttggtgccagacacaatgtatg |
35243478 |
T |
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| Q |
201 |
gttgacattcaagttttaccaatgttgcctatttcaaaagtgttgttctctg |
252 |
Q |
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| T |
35243479 |
gttgacattcaagttttaccaatgttgcctatttcaaaagtgttgttttctg |
35243530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 35231869 - 35232074
Alignment:
| Q |
1 |
agctgttaatgcatactatattctgctcgcttgataggtttagaatctggcgatggcaatgttgttactattggaccaaccttaacagctttggaaagta |
100 |
Q |
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| T |
35231869 |
agctgttattgcatactat--tctgctcgcttgataggtttagaatatggtgatgccaatgttgttactactggaccaaccttaacagctttgttaagta |
35231966 |
T |
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| Q |
101 |
taagagctcaaatgtggtggcatgtaagagaaggaatgaatatgtatgaggtagattttagaccagggtttgcttatcttggtgccagacacaatgtatg |
200 |
Q |
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| T |
35231967 |
taagagctcaaatgtggtggcatgtaagagaagcaatgaatatgcgtgaggaaaattttagaccagggtt--------ttggtgctagacacaatgtatg |
35232058 |
T |
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| Q |
201 |
gttgacattcaagttt |
216 |
Q |
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| T |
35232059 |
gttgacattcaagttt |
35232074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 6526006 - 6525966
Alignment:
| Q |
110 |
aaatgtggtggcatgtaagagaaggaatgaatatgtatgag |
150 |
Q |
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| T |
6526006 |
aaatgtggtggcatgtaaaagaaggagggaatatgtatgag |
6525966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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