View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15825_high_1 (Length: 675)

Name: NF15825_high_1
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15825_high_1
NF15825_high_1
[»] chr2 (1 HSPs)
chr2 (21-664)||(29451398-29452041)


Alignment Details
Target: chr2 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 21 - 664
Target Start/End: Original strand, 29451398 - 29452041
Alignment:
Q  21 tcctcagcacgcaccagcttagcccgaacaagcagccttgctcttagtttcaacgaccgtctctcaaccgcctccaccgccggagacaccgtctcatccg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29451398 tcctcagcacgcaccagcttagcccgaacaagcagccttgctcttagtttcaacgaccgtctctccaccgcctccaccgccggagacaccgtctcatccg 29451497  T
Q  121 ctgtcatccgccgtcctcaccgaagctcagactccaactggacagcaataaaagcagccaccaatctctcctctgatgggagacttcatctccgtcattt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29451498 ctgtcatccgccgtcctcaccgaagctcagactccaactggacagcaataaaagcagccaccaatctctcctctgatgggagacttcatctccgtcattt 29451597  T
Q  221 aaagcttatccgccaccttggctccggtgacctcggccgtgtgtttctatgtcgcctccgtgactacgacggtgcaaattttgcacttaaggttgttgat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29451598 aaagcttatccgccaccttggctccggtgacctcggccgtgtgtttctatgtcgcctccgtgactacgacggtgcaaattttgcacttaaggttgttgat 29451697  T
Q  321 aaagaccttcttactcctaagaaattctctcacgtggaaacggaggcggagattcttcacgcgctggatcatccttttttaccgacgctctatgcgcgga 420  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29451698 aaagaccttcttactcctaagaaattctctcacgcggaaacggaggcggagattcttcacgcgctggatcatccttttttaccgacgctctatgcgcgga 29451797  T
Q  421 tcgatgtttctcactacacttgcctccttattgactattgtcccggcggtgatctccacgctcttctacgtaaacagccgggaaaccgactcacaatttc 520  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29451798 tcgatgtttctcactacacgtgcctccttattgactattgtcccggcggtgatctccacgctcttctacgtaaacagccggggaaccgactcacaatttc 29451897  T
Q  521 ggcggcgaggtttttcgctgccgagattcttgttgctatcgagtatcttcacgcgcttggcgtggtataccgtgacttgaaacctgagaatgtacttcta 620  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29451898 ggcggcgaggtttttcgctgccgagattcttgttgctctcgagtatcttcacgcgcttggcgtggtataccgtgacttgaaacctgagaatgtacttcta 29451997  T
Q  621 cgcgaagatggacacgtcatgctttcagattttgacctttgctt 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29451998 cgcgaagatggacacgtcatgctttcagattttgacctttgctt 29452041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University