View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15825_high_13 (Length: 285)
Name: NF15825_high_13
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 31729175 - 31729316
Alignment:
| Q |
15 |
ggctaaggaaattagcttcgtgtaaaaggccacaagggcgacaacaaaatcatatattttttactgatgacaattttgtggatttgtggacaggagttat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31729175 |
ggctaaggaaattagcttcgtgtaaaaggccacaagggcgacaacaaaatcatatattttttactgatgacaattttgtggatttgtggacaggagttat |
31729274 |
T |
|
| Q |
115 |
attagtttttactctacttgaaagtgtgaaaatgaagtataa |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31729275 |
attagtttttactctacttgaaagtgtgaaaatgaagtataa |
31729316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 31729336 - 31729453
Alignment:
| Q |
153 |
ataatcaagtttgtaacagatactattgtgtaatactatgttgaattatcattcagtttaagtgg-nnnnnnntgttacttattttttatttaaaacttt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31729336 |
ataatcaagtttgtaacagatactattgtgtaatactatgttgaattatcattcagtttaagtggaaaaaaaatgttacttattttttatttaaaacttt |
31729435 |
T |
|
| Q |
252 |
tcgtgtttgagatcaact |
269 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31729436 |
tcgtgtttgagatcaact |
31729453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University