View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15825_high_2 (Length: 594)
Name: NF15825_high_2
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 13 - 594
Target Start/End: Complemental strand, 46303746 - 46303165
Alignment:
| Q |
13 |
caaaggcacaaacgagacactaacacatcgacacaagtaaatttttagaatatgaaagtattcaattaaatgtaacgacatgggtcagtgttatttcgag |
112 |
Q |
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| T |
46303746 |
caaagacacaaacgagacactaacacatcgacacaagtaaatttttagaatatgaaagtattcaattaaatgtaacgacatgggtcagtgttatttcaag |
46303647 |
T |
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| Q |
113 |
cagtgaacacgacttcaatctaaattatgagagatgcatagaatgttaagtaagaggtgacatacatggattgcaagtttcttaaatcaccaattgctgg |
212 |
Q |
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| T |
46303646 |
cagtgaacacgacttcaatctaaagtatgagagatgcatagaatgttaagtaagaggtgacatacatggattgcaagtttcttaaatcaccaattgctgg |
46303547 |
T |
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| Q |
213 |
tgatatctcaccaccaaggttcaagcttgacaaattccttcattaatatgnnnnnnncattagagattaacaaatacaaaaaattgttggtaatgagaga |
312 |
Q |
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| T |
46303546 |
tgatatctcaccaccaaggttcaagcttgacaaattccttcattaatatgaaaaaaacattagagattaacaaatacaaaaaattgttggtaatgagaga |
46303447 |
T |
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| Q |
313 |
gtaagacaagtgatggatatagaccgagggataaaggactcacagagatacaacagtaagagcatgactggcgttatcacagaaaactccacgccatgag |
412 |
Q |
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| T |
46303446 |
gtaagacaagtgatggatatagaccgagggataaaggactcacagagatacaacagtaagagcatgactggcgttatcacagaaaactccacgccatgag |
46303347 |
T |
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| Q |
413 |
caaaagtcatcattgtgtacatcatcccagtcaaggagaacgtcagctatgttgttgaaggaagacttcattgccattaatgcttgtcctaatgcattta |
512 |
Q |
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| T |
46303346 |
caaaagtcatcattgtgtacatcatcccagtcaaggagaacgtcagctatgttgttgaaggaagacttcattgccattaatgcttgtcctaatgcattta |
46303247 |
T |
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| Q |
513 |
ccaaacattcatcaccttaatcaggtagtattaatctcaaacataggatcttttaatatcattattatagcacatattgtgt |
594 |
Q |
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| T |
46303246 |
ccaaacattcatcaccttaatcaggtagtattaatctcaaacataggatcttttaatatcattattatagcacatattgtgt |
46303165 |
T |
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