View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15825_high_23 (Length: 233)
Name: NF15825_high_23
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 59 - 217
Target Start/End: Complemental strand, 42006451 - 42006293
Alignment:
| Q |
59 |
gagatagatccggtatacctgaactgaagcccaacctttggcgacatcagcatattcgctatcagattctccaatccaaccccacaaaactctcctatcc |
158 |
Q |
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| T |
42006451 |
gagatagatccggtatacctgaactgaagcccaacctttggcgacatcagcatattcgctatcagattctccaatccaaccccacaaaactctcctatcc |
42006352 |
T |
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| Q |
159 |
tttttctgatcataaaatgtcttggaagcatagaatataccataatcatacctaagtcc |
217 |
Q |
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| T |
42006351 |
tttttctgatcataaaatgtcttggaagcatagaatataccataatcatacctaagtcc |
42006293 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 42591103 - 42591051
Alignment:
| Q |
165 |
tgatcataaaatgtcttggaagcatagaatataccataatcatacctaagtcc |
217 |
Q |
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| T |
42591103 |
tgatcaaaaaatgacttggaagcatagaaattaccatagtcatatctaagtcc |
42591051 |
T |
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