View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15825_high_24 (Length: 230)

Name: NF15825_high_24
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15825_high_24
NF15825_high_24
[»] chr5 (12 HSPs)
chr5 (14-134)||(28441568-28441688)
chr5 (17-134)||(2452890-2453006)
chr5 (28-74)||(22937385-22937431)
chr5 (20-89)||(32837635-32837703)
chr5 (28-84)||(14376257-14376313)
chr5 (28-75)||(21333129-21333176)
chr5 (28-75)||(21336145-21336192)
chr5 (28-66)||(3194818-3194856)
chr5 (28-66)||(34653214-34653252)
chr5 (39-75)||(43491375-43491411)
chr5 (28-75)||(26547701-26547748)
chr5 (28-75)||(26551260-26551307)
[»] chr4 (11 HSPs)
chr4 (14-134)||(10385516-10385636)
chr4 (14-136)||(5680995-5681117)
chr4 (14-109)||(5672473-5672569)
chr4 (28-73)||(40617142-40617187)
chr4 (14-66)||(5670198-5670250)
chr4 (19-72)||(19864925-19864978)
chr4 (28-73)||(27013892-27013937)
chr4 (14-89)||(11703032-11703107)
chr4 (28-75)||(19859970-19860017)
chr4 (28-75)||(37103663-37103710)
chr4 (28-74)||(12237900-12237946)
[»] scaffold0360 (2 HSPs)
scaffold0360 (17-134)||(2032-2149)
scaffold0360 (14-85)||(5911-5978)
[»] chr6 (10 HSPs)
chr6 (46-140)||(13096113-13096207)
chr6 (131-204)||(13096224-13096297)
chr6 (28-74)||(5738532-5738578)
chr6 (28-89)||(23388547-23388608)
chr6 (28-71)||(11410379-11410422)
chr6 (28-75)||(1126177-1126224)
chr6 (20-63)||(2371987-2372030)
chr6 (28-89)||(9953582-9953643)
chr6 (28-64)||(28848481-28848517)
chr6 (14-75)||(31262389-31262452)
[»] chr3 (9 HSPs)
chr3 (36-134)||(16185066-16185164)
chr3 (14-89)||(2280063-2280138)
chr3 (28-75)||(10884571-10884618)
chr3 (28-64)||(30158500-30158536)
chr3 (28-75)||(10107032-10107079)
chr3 (14-88)||(17532054-17532128)
chr3 (28-66)||(44508429-44508467)
chr3 (28-89)||(36037424-36037485)
chr3 (14-89)||(42354855-42354931)
[»] chr7 (6 HSPs)
chr7 (14-89)||(10431918-10431993)
chr7 (20-75)||(8276617-8276672)
chr7 (28-75)||(11825819-11825866)
chr7 (28-75)||(8397467-8397513)
chr7 (28-62)||(22256881-22256915)
chr7 (20-75)||(26557114-26557170)
[»] chr2 (7 HSPs)
chr2 (19-75)||(38005622-38005678)
chr2 (28-71)||(29435365-29435408)
chr2 (25-74)||(10600575-10600624)
chr2 (19-75)||(4577462-4577518)
chr2 (28-71)||(15704432-15704475)
chr2 (28-71)||(15719686-15719729)
chr2 (14-89)||(1507082-1507156)
[»] chr8 (9 HSPs)
chr8 (28-89)||(18721729-18721790)
chr8 (14-75)||(45155704-45155765)
chr8 (28-75)||(5963864-5963911)
chr8 (28-89)||(25595105-25595166)
chr8 (28-84)||(25591921-25591977)
chr8 (28-71)||(18696388-18696431)
chr8 (32-73)||(14421370-14421411)
chr8 (32-84)||(23613156-23613208)
chr8 (28-60)||(31984621-31984653)
[»] chr1 (4 HSPs)
chr1 (28-75)||(1950902-1950949)
chr1 (28-71)||(49715985-49716028)
chr1 (28-71)||(49719468-49719511)
chr1 (28-75)||(37641475-37641522)
[»] scaffold0381 (1 HSPs)
scaffold0381 (28-74)||(5847-5893)
[»] scaffold0214 (3 HSPs)
scaffold0214 (19-75)||(13218-13274)
scaffold0214 (19-75)||(19668-19724)
scaffold0214 (19-75)||(27234-27290)
[»] scaffold0062 (2 HSPs)
scaffold0062 (28-71)||(53344-53387)
scaffold0062 (28-71)||(68243-68286)
[»] scaffold0035 (1 HSPs)
scaffold0035 (28-74)||(62145-62191)
[»] scaffold0014 (1 HSPs)
scaffold0014 (28-60)||(226979-227011)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 28441568 - 28441688
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaatataattcaattggtgttgttcttc 113  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||  ||||  ||    
T  28441568 atgaataaagaaataaacaacgtagtaaagaaaataaaccgatagagttccgtcgttgccggtgttgctcttcaatctaattcaatcggtactgttgctc 28441667  T
Q  114 tctatttccatgtgcttctcc 134  Q
    |||||||||||||||||||||    
T  28441668 tctatttccatgtgcttctcc 28441688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 2453006 - 2452890
Alignment:
Q  17 aataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaatataattcaattggtgttgttcttctct 116  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||| |||||| |||||||||  ||||||||  |||||    
T  2453006 aataaagaaacaa-caacatagtaaagaaaataaatccatagagttccgtcgttgccggtgttgctattcaatctaattcaatcagtgttgttgctctct 2452908  T
Q  117 atttccatgtgcttctcc 134  Q
    ||||||||||||||||||    
T  2452907 atttccatgtgcttctcc 2452890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 22937385 - 22937431
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccg 74  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  22937385 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 22937431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 32837703 - 32837635
Alignment:
Q  20 aaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    ||||||| |||||||||||||||||||||||||||  ||| |||||||||||||||  ||||||||||||    
T  32837703 aaagaaataaacaacatagtaaagaaaataaaccgtcagaattccgtagttgccgg-cttgctcttcaat 32837635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 14376257 - 14376313
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctct 84  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||| ||||||||    
T  14376257 aaacaacatagtaaagaaaataaaccgatagaaatccgttgttgccggcgttgctct 14376313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 21333129 - 21333176
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||    
T  21333129 aaacaacatagtaaagaaaataaaccgatagagttccgtcgctgccgg 21333176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 21336145 - 21336192
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||    
T  21336145 aaacaacatagtaaagaaaataaaccgatagagttccgtcgctgccgg 21336192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 3194856 - 3194818
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgt 66  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  3194856 aaacaacatagtaaagaaaataaaccgatagaattccgt 3194818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 34653214 - 34653252
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgt 66  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  34653214 aaacaacatagtaaagaaaataaaccgatagaattccgt 34653252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 43491411 - 43491375
Alignment:
Q  39 taaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||||||||||||||||||||| ||||||||    
T  43491411 taaagaaaataaaccgatagagttccgtcgttgccgg 43491375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 26547748 - 26547701
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||| |||| | ||||||||||||||||||||| ||||||||    
T  26547748 aaacaacataataaaaacaataaaccgatagagttccgtcgttgccgg 26547701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 26551307 - 26551260
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||| |||| | ||||||||||||||||||||| ||||||||    
T  26551307 aaacaacataataaaaacaataaaccgatagagttccgtcgttgccgg 26551260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 10385636 - 10385516
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaatataattcaattggtgttgttcttc 113  Q
    ||||||||||||||||||||||||||||| ||||||||   |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||  ||    
T  10385636 atgaataaagaaacaaacaacatagtaaaaaaaataaattcatagagttccgtcgttgccggtgttgctcttcaatctaattcaatcggtgttgttgctc 10385537  T
Q  114 tctatttccatgtgcttctcc 134  Q
    |||||||||||||||||||||    
T  10385536 tctatttccatgtgcttctcc 10385516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 5681117 - 5680995
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaatataattcaattggtgttgttcttc 113  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||| |||||||||  ||    
T  5681117 atgaataaagaaataaacaatatagtaaagaaaataaaccgatagagttccgtcgttgccagtgttactcttcaatctaattcaatcggtgttgttgctc 5681018  T
Q  114 tctatttccatgtgcttctcctt 136  Q
    |||||||||||||||||| ||||    
T  5681017 tctatttccatgtgcttcccctt 5680995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 5672569 - 5672473
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccg-tagttgccggtgttgctcttcaatataattcaattggtgttgtt 109  Q
    |||| |||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||| | | ||||| | ||||||||| || ||||||    
T  5672569 atgattaaagaaataaacaacatagcaaagaaaataaaccgatagagttccgttcgttgccggtgcttcgcttcagtttaattcaatcggcgttgtt 5672473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 40617142 - 40617187
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgcc 73  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  40617142 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttgcc 40617187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 5670250 - 5670198
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgt 66  Q
    |||| |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  5670250 atgattaaagaaataaacaacatagcaaagaaaataaaccgatagagttccgt 5670198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 19864925 - 19864978
Alignment:
Q  19 taaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgc 72  Q
    ||||| || |||||| |||||||||||||||||||||||||||||||| |||||    
T  19864925 taaaggaataaacaagatagtaaagaaaataaaccgatagagttccgtcgttgc 19864978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 27013937 - 27013892
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgcc 73  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
T  27013937 aaacaacatagtaaagaaaataaatcgatagagttccgtcgttgcc 27013892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 11703032 - 11703107
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    |||| |||| ||| |||||||||||||||||||||||||||||||| || ||| | || ||| ||||||| |||||    
T  11703032 atgattaaataaataaacaacatagtaaagaaaataaaccgatagaatttcgtcgatgtcggcgttgctcctcaat 11703107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 19859970 - 19860017
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||| ||||||||||||||||||||||  |||||||| ||||||||    
T  19859970 aaacaatatagtaaagaaaataaaccgatgaagttccgtcgttgccgg 19860017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 37103663 - 37103710
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||| |||||||||||||||||||||||| ||  ||||||||    
T  37103663 aaacaacataataaagaaaataaaccgatagagtttcgccgttgccgg 37103710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 12237946 - 12237900
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccg 74  Q
    |||||||||| ||||||||||||||||||| | |||||| |||||||    
T  12237946 aaacaacataataaagaaaataaaccgataaaattccgtcgttgccg 12237900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 2149 - 2032
Alignment:
Q  17 aataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaatataattcaattggtgttgttcttctct 116  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||| | |||||||  |||||    
T  2149 aataaagaaacaaacaacataataaagaaaataaaccgatagagttccgtcgttgccgatgttgctcttcaatctaatttaatcgatgttgttgctctct 2050  T
Q  117 atttccatgtgcttctcc 134  Q
    ||||||||||||||||||    
T  2049 atttccatgtgcttctcc 2032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 5978 - 5911
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctctt 85  Q
    |||||||||||||||||||   ||||||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  5978 atgaataaagaaacaaaca---tagtaaa-aaaataaaccgatagagttccgtcgttgccgatgttgctctt 5911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 13096113 - 13096207
Alignment:
Q  46 aataaaccgatagagttccgtagttgccggtgttgctcttcaatataattcaattggtgttgttcttctctatttccatgtgcttctccttttct 140  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  13096113 aataaaccgatagagtttcgtcgttgtcggtgttgctcttcaatctaattcaattggtgttgttgttctctatttccatgtgcttctcctcttct 13096207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 13096224 - 13096297
Alignment:
Q  131 ctccttttctttcctttccaaatcgtcagtgactgtatgccgaaccacccctttttattgctagcctcctgtat 204  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||  ||||||||||| |||||    
T  13096224 ctccttttctttcatttccaaatcgtgagtgactgtatgccgaacgaccccttttggttgctagcctcttgtat 13096297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 5738532 - 5738578
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccg 74  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  5738532 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccg 5738578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 23388547 - 23388608
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||| |||||    
T  23388547 aaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgtcggcgttgctcctcaat 23388608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 11410422 - 11410379
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttg 71  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  11410422 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 11410379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 1126177 - 1126224
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  1126177 aaacaacatagtaaaaacaataaaccgatagagttccgtcgttgccgg 1126224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 2372030 - 2371987
Alignment:
Q  20 aaagaaacaaacaacatagtaaagaaaataaaccgatagagttc 63  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||    
T  2372030 aaagaaataaacagcatagtaaaaaaaataaaccgatagagttc 2371987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 9953643 - 9953582
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    |||||||||| |||| ||||||| ||||||||||| ||| |||| ||| ||||||| |||||    
T  9953643 aaacaacataataaaaaaaataagccgatagagtttcgtcgttgtcggcgttgctcctcaat 9953582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 28848517 - 28848481
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttcc 64  Q
    |||||||||||||||||||||||| |||| |||||||    
T  28848517 aaacaacatagtaaagaaaataaatcgatggagttcc 28848481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 31262452 - 31262389
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaa--ataaaccgatagagttccgtagttgccgg 75  Q
    |||| |||||||| ||||||||||||| |||||  ||||||| |||||||||| | ||||||||    
T  31262452 atgattaaagaaataaacaacatagtagagaaaatataaaccaatagagttccatcgttgccgg 31262389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 16185066 - 16185164
Alignment:
Q  36 tagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaatataattcaattggtgttgttcttctctatttccatgtgcttctcc 134  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||| |||  | ||  |||||||||||||||||||||||    
T  16185066 tagtaaagaaaataaatcgatagagttctgtcgttgccggtgttgctcttcaatctaattcaatcggtactcttgctctctatttccatgtgcttctcc 16185164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 2280063 - 2280138
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| |||||    
T  2280063 atgaataaagaaacaaacaacattgtaaagaaaataaaccgatagaattccgtcgttgccggcgttgctcctcaat 2280138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 10884618 - 10884571
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  10884618 aaacaacatagtaaagaaaataaaccaataaagttccgtcgttgccgg 10884571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 30158500 - 30158536
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttcc 64  Q
    |||||||||| ||||||||||||||||||||||||||    
T  30158500 aaacaacataataaagaaaataaaccgatagagttcc 30158536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 10107032 - 10107079
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||||||||||||||||||| ||||  |||||| ||||||||    
T  10107032 aaacaacatagtaaagaaaataaaccaataggattccgtcgttgccgg 10107079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 17532054 - 17532128
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaa 88  Q
    |||| ||||| || || ||||||||||||||||||||| ||| |||||||||| |||| |||  |||||| ||||    
T  17532054 atgattaaagcaataagcaacatagtaaagaaaataaagcgaaagagttccgtcgttgtcggcattgctcctcaa 17532128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 44508467 - 44508429
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgt 66  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  44508467 aaacaacatagtaaagaaaataaatcgatagaattccgt 44508429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 36037424 - 36037485
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    |||||||||| ||||||||||||| |||||||||| ||  |||| ||| ||||||| |||||    
T  36037424 aaacaacataataaagaaaataaatcgatagagtttcgacgttgtcggcgttgctcatcaat 36037485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 42354855 - 42354931
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaa-taaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    |||| |||| ||| ||||||||||||||| |||| ||||||||||||||| ||| | || ||| ||||||| |||||    
T  42354855 atgattaaataaagaaacaacatagtaaaaaaaaataaaccgatagagtttcgtcgatgtcggcgttgctcctcaat 42354931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 10431993 - 10431918
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    ||||||||||||| ||||||| ||||||||||||||||||  ||||||||||| ||||||| ||||||||||||||    
T  10431993 atgaataaagaaataaacaacctagtaaagaaaataaaccattagagttccgtcgttgccgatgttgctcttcaat 10431918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 8276672 - 8276617
Alignment:
Q  20 aaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  8276672 aaagaaataaacaacataataaagaaaataaactgatagagttccgtcgttgccgg 8276617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 11825819 - 11825866
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  11825819 aaacaacataataaagaaaataaaccgatagagttccgtcgttgccgg 11825866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 8397513 - 8397467
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  8397513 aaacaacataataaagaaaataaaccg-tagagttccgtcgttgccgg 8397467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 22256915 - 22256881
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagtt 62  Q
    |||||||||| ||||||||||||||||||||||||    
T  22256915 aaacaacataataaagaaaataaaccgatagagtt 22256881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 26557170 - 26557114
Alignment:
Q  20 aaagaaacaaacaacatagtaaagaaaa-taaaccgatagagttccgtagttgccgg 75  Q
    ||||||| |||||||||| |||| |||| ||||| ||||||||||||| ||||||||    
T  26557170 aaagaaataaacaacataataaaaaaaaataaactgatagagttccgtcgttgccgg 26557114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 38005622 - 38005678
Alignment:
Q  19 taaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38005622 taaaggaataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccgg 38005678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 29435408 - 29435365
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttg 71  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  29435408 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 29435365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 10600624 - 10600575
Alignment:
Q  25 aacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccg 74  Q
    ||||||||| ||||||||||||||||||||||| |||||||| |||||||    
T  10600624 aacaaacaatatagtaaagaaaataaaccgataaagttccgtcgttgccg 10600575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 4577518 - 4577462
Alignment:
Q  19 taaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||| |||||||||||||||||||||||| |||||||| | ||| ||||||||    
T  4577518 taaagaaataaacaacatagtaaagaaaataaatcgatagagcttcgtcgttgccgg 4577462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 15704432 - 15704475
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttg 71  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  15704432 aaacaacatagtaaagaaaataaaccgatagagtttcgtcgttg 15704475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 15719686 - 15719729
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttg 71  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  15719686 aaacaacatagtaaagaaaataaaccgatagagtttcgtcgttg 15719729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 1507082 - 1507156
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    |||| |||| ||| |||||||||||||| |||||||||||||||||||| ||| | || ||| ||||||| |||||    
T  1507082 atgattaaataaataaacaacatagtaa-gaaaataaaccgatagagtttcgtcgatgtcggcgttgctcctcaat 1507156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 18721729 - 18721790
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||| |||||    
T  18721729 aaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgtcggcgttgctcctcaat 18721790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 45155704 - 45155765
Alignment:
Q  14 atgaataaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||| |||||||| |||||||||||||||||||||||||  |||||||||||| ||||||||    
T  45155704 atgattaaagaaataaacaacatagtaaagaaaataaacatatagagttccgtcgttgccgg 45155765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 5963911 - 5963864
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  5963911 aaacaacataataaagaaaataaaccgatagagttccgtcgttgccgg 5963864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 25595105 - 25595166
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctcttcaat 89  Q
    ||||||||||||||| ||||||||||||||||||| ||| |||| ||| ||||||| |||||    
T  25595105 aaacaacatagtaaaaaaaataaaccgatagagtttcgtcgttgtcggcgttgctcctcaat 25595166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 25591921 - 25591977
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctct 84  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| ||  ||||||||    
T  25591921 aaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgtcgacgttgctct 25591977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 18696388 - 18696431
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttg 71  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  18696388 aaacaacatagtaaagaaaataaaccgatagagtttcgtcgttg 18696431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 14421411 - 14421370
Alignment:
Q  32 aacatagtaaagaaaataaaccgatagagttccgtagttgcc 73  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  14421411 aacatagtaaagaaaataaaccgatagaattccgtcgttgcc 14421370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 23613208 - 23613156
Alignment:
Q  32 aacatagtaaagaaaataaaccgatagagttccgtagttgccggtgttgctct 84  Q
    ||||||||||||||||||||||||||||||| ||| |||| ||  ||||||||    
T  23613208 aacatagtaaagaaaataaaccgatagagtttcgtcgttgtcgacgttgctct 23613156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 31984653 - 31984621
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagag 60  Q
    |||||||||||||||||||||||||||||||||    
T  31984653 aaacaacatagtaaagaaaataaaccgatagag 31984621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 1950902 - 1950949
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  1950902 aaacaacatagtaaagaaaataaaccaatagagttccgtcgttgccgg 1950949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 49716028 - 49715985
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttg 71  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  49716028 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 49715985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 49719511 - 49719468
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttg 71  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  49719511 aaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 49719468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 37641522 - 37641475
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||||| ||||||||||||||||||||||||| || ||||||||    
T  37641522 aaacaacataataaagaaaataaaccgatagagttctgtcgttgccgg 37641475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 5847 - 5893
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccg 74  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||    
T  5847 aaacaacatagtaaagaaaataaatcgatagagttccgtcgttgccg 5893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 13274 - 13218
Alignment:
Q  19 taaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||| ||| ||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  13274 taaaaaaataaacaacatagtaaagaaaataaaccgatagagcttcgtcgttgccgg 13218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 19724 - 19668
Alignment:
Q  19 taaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||||||  ||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  19724 taaagaattaaacaacatagtaaagaaaataaaccgatagagcttcgtcgttgccgg 19668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 27290 - 27234
Alignment:
Q  19 taaagaaacaaacaacatagtaaagaaaataaaccgatagagttccgtagttgccgg 75  Q
    |||| ||| ||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  27290 taaaaaaataaacaacatagtaaagaaaataaaccgatagagcttcgtcgttgccgg 27234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 53344 - 53387
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttg 71  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  53344 aaacaacatagtaaagaaaataaaccgatagagtttcgtcgttg 53387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 68243 - 68286
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttg 71  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  68243 aaacaacatagtaaagaaaataaaccgatagagtttcgtcgttg 68286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 62191 - 62145
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagagttccgtagttgccg 74  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  62191 aaacaacatggtaaagaaaataacccgatagagttccgtcgttgccg 62145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 227011 - 226979
Alignment:
Q  28 aaacaacatagtaaagaaaataaaccgatagag 60  Q
    |||||||||||||||||||||||||||||||||    
T  227011 aaacaacatagtaaagaaaataaaccgatagag 226979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University