View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15825_high_5 (Length: 504)

Name: NF15825_high_5
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15825_high_5
NF15825_high_5
[»] chr5 (43 HSPs)
chr5 (8-283)||(19906393-19906676)
chr5 (191-320)||(23737554-23737682)
chr5 (238-321)||(22129034-22129117)
chr5 (191-258)||(19209431-19209498)
chr5 (238-321)||(5023610-5023693)
chr5 (324-382)||(40452388-40452446)
chr5 (261-321)||(34369715-34369775)
chr5 (329-383)||(6125408-6125462)
chr5 (329-383)||(40697128-40697182)
chr5 (329-383)||(42558627-42558681)
chr5 (252-321)||(34607341-34607410)
chr5 (331-386)||(1576754-1576810)
chr5 (331-386)||(1608005-1608061)
chr5 (338-386)||(1868972-1869020)
chr5 (329-385)||(10537134-10537190)
chr5 (329-385)||(13739351-13739407)
chr5 (329-385)||(29922097-29922153)
chr5 (329-385)||(35536966-35537022)
chr5 (327-382)||(22573759-22573814)
chr5 (330-384)||(17868113-17868167)
chr5 (275-321)||(19209487-19209533)
chr5 (329-387)||(39154667-39154725)
chr5 (330-367)||(2577354-2577391)
chr5 (338-383)||(6150922-6150967)
chr5 (329-385)||(14243947-14244003)
chr5 (327-367)||(15122657-15122697)
chr5 (329-385)||(41125796-41125852)
chr5 (238-273)||(34369774-34369809)
chr5 (329-367)||(589275-589313)
chr5 (329-379)||(5559833-5559883)
chr5 (329-387)||(28625602-28625659)
chr5 (329-367)||(29659182-29659220)
chr5 (329-383)||(41059699-41059753)
chr5 (329-385)||(2878584-2878641)
chr5 (329-378)||(11706826-11706875)
chr5 (329-382)||(12467390-12467443)
chr5 (329-366)||(20458485-20458522)
chr5 (329-386)||(22201838-22201895)
chr5 (330-386)||(27806038-27806095)
chr5 (329-386)||(35083361-35083418)
chr5 (330-386)||(2577481-2577537)
chr5 (238-322)||(15879607-15879691)
chr5 (338-382)||(41534759-41534803)
[»] chr7 (30 HSPs)
chr7 (321-423)||(10383577-10383679)
chr7 (8-103)||(12762950-12763045)
chr7 (241-321)||(22691028-22691108)
chr7 (329-386)||(25908416-25908473)
chr7 (329-386)||(29378767-29378824)
chr7 (329-382)||(39279552-39279605)
chr7 (329-385)||(33204956-33205012)
chr7 (329-384)||(34923055-34923110)
chr7 (329-383)||(29390461-29390515)
chr7 (329-383)||(33287985-33288039)
chr7 (332-386)||(38372683-38372737)
chr7 (338-383)||(40629343-40629388)
chr7 (329-365)||(44613401-44613437)
chr7 (329-387)||(22032884-22032942)
chr7 (330-385)||(47511168-47511223)
chr7 (329-367)||(991621-991659)
chr7 (327-381)||(6406779-6406833)
chr7 (330-384)||(16932995-16933049)
chr7 (330-384)||(16938378-16938432)
chr7 (329-383)||(18837189-18837243)
chr7 (329-383)||(38372525-38372579)
chr7 (330-367)||(1312236-1312273)
chr7 (329-382)||(18704307-18704360)
chr7 (330-383)||(18765021-18765074)
chr7 (329-386)||(26331887-26331944)
chr7 (330-383)||(40629482-40629535)
chr7 (330-367)||(41037846-41037883)
chr7 (330-386)||(5947701-5947757)
chr7 (250-322)||(11400681-11400753)
chr7 (329-365)||(43818806-43818842)
[»] chr6 (19 HSPs)
chr6 (8-103)||(7405165-7405260)
chr6 (244-318)||(19830980-19831054)
chr6 (329-383)||(35071338-35071392)
chr6 (329-365)||(6752934-6752970)
chr6 (329-388)||(6776930-6776989)
chr6 (329-365)||(23239369-23239405)
chr6 (327-367)||(29623404-29623444)
chr6 (341-388)||(4808705-4808752)
chr6 (330-381)||(20776477-20776528)
chr6 (341-383)||(9202309-9202351)
chr6 (329-367)||(12816827-12816865)
chr6 (329-367)||(29052454-29052492)
chr6 (329-367)||(32165187-32165225)
chr6 (338-382)||(1172481-1172525)
chr6 (329-388)||(6758750-6758809)
chr6 (331-367)||(15930613-15930649)
chr6 (329-385)||(21025127-21025183)
chr6 (329-385)||(23239212-23239268)
chr6 (329-365)||(34223452-34223488)
[»] chr8 (28 HSPs)
chr8 (238-323)||(28952139-28952224)
chr8 (214-282)||(17000441-17000509)
chr8 (329-383)||(10213817-10213871)
chr8 (329-386)||(28879177-28879234)
chr8 (329-386)||(32975809-32975866)
chr8 (338-386)||(10298834-10298882)
chr8 (329-385)||(32212923-32212979)
chr8 (342-385)||(10480026-10480069)
chr8 (327-386)||(24350426-24350485)
chr8 (329-386)||(13131565-13131622)
chr8 (342-386)||(11460783-11460827)
chr8 (238-321)||(15739755-15739838)
chr8 (329-387)||(24866857-24866915)
chr8 (329-384)||(34286473-34286528)
chr8 (329-383)||(25465758-25465811)
chr8 (329-367)||(28280831-28280869)
chr8 (329-367)||(35055543-35055581)
chr8 (329-367)||(37410839-37410877)
chr8 (329-367)||(41145322-41145360)
chr8 (329-367)||(42102228-42102266)
chr8 (338-383)||(15763219-15763264)
chr8 (330-383)||(16972266-16972319)
chr8 (329-386)||(24087293-24087350)
chr8 (329-382)||(32131408-32131461)
chr8 (330-362)||(9131059-9131091)
chr8 (331-367)||(9788933-9788969)
chr8 (329-365)||(19925679-19925715)
chr8 (329-385)||(42363381-42363437)
[»] scaffold0179 (2 HSPs)
scaffold0179 (183-321)||(11223-11351)
scaffold0179 (220-321)||(23791-23892)
[»] chr4 (34 HSPs)
chr4 (238-321)||(7622189-7622272)
chr4 (187-283)||(53177504-53177599)
chr4 (238-322)||(10802668-10802752)
chr4 (329-382)||(48591335-48591388)
chr4 (330-384)||(3564329-3564383)
chr4 (329-383)||(17222951-17223005)
chr4 (329-383)||(23297405-23297459)
chr4 (329-383)||(36741026-36741080)
chr4 (329-386)||(42153069-42153126)
chr4 (329-385)||(12495552-12495608)
chr4 (329-385)||(48667792-48667848)
chr4 (238-321)||(7777544-7777627)
chr4 (327-382)||(28074484-28074539)
chr4 (329-367)||(18630821-18630859)
chr4 (329-367)||(23297557-23297595)
chr4 (330-367)||(11298705-11298742)
chr4 (329-382)||(28663694-28663747)
chr4 (329-386)||(30956806-30956863)
chr4 (252-321)||(34742410-34742479)
chr4 (329-386)||(38345730-38345786)
chr4 (329-386)||(43699548-43699605)
chr4 (238-321)||(3794024-3794107)
chr4 (238-321)||(7792336-7792419)
chr4 (329-367)||(15179939-15179977)
chr4 (329-367)||(35405805-35405843)
chr4 (329-382)||(22273761-22273814)
chr4 (341-382)||(32628912-32628953)
chr4 (332-365)||(41229028-41229061)
chr4 (329-366)||(42617157-42617194)
chr4 (330-383)||(48687057-48687109)
chr4 (329-385)||(488292-488348)
chr4 (238-322)||(10994836-10994920)
chr4 (330-386)||(34633363-34633419)
chr4 (330-386)||(40699320-40699376)
[»] chr2 (28 HSPs)
chr2 (250-320)||(30934587-30934657)
chr2 (247-321)||(28574778-28574852)
chr2 (259-321)||(40070694-40070756)
chr2 (329-383)||(5903660-5903714)
chr2 (329-383)||(5903737-5903791)
chr2 (329-383)||(36501425-36501479)
chr2 (329-385)||(4533444-4533500)
chr2 (238-322)||(6661134-6661218)
chr2 (329-385)||(8832579-8832635)
chr2 (330-382)||(33321223-33321275)
chr2 (327-386)||(37409763-37409822)
chr2 (329-386)||(12442924-12442981)
chr2 (330-386)||(38215987-38216043)
chr2 (329-369)||(39592369-39592409)
chr2 (324-367)||(4027042-4027085)
chr2 (329-367)||(13098025-13098063)
chr2 (329-367)||(22898283-22898321)
chr2 (329-383)||(38216141-38216195)
chr2 (333-366)||(755638-755671)
chr2 (330-383)||(2790137-2790190)
chr2 (329-382)||(37420028-37420081)
chr2 (329-366)||(38010597-38010634)
chr2 (329-386)||(40301316-40301373)
chr2 (329-386)||(45163792-45163849)
chr2 (330-386)||(4090453-4090509)
chr2 (329-365)||(21788579-21788615)
chr2 (329-385)||(24007913-24007969)
chr2 (329-383)||(27703523-27703574)
[»] chr1 (32 HSPs)
chr1 (246-321)||(9469462-9469537)
chr1 (259-322)||(22590390-22590453)
chr1 (329-383)||(47413494-47413548)
chr1 (329-385)||(28690126-28690182)
chr1 (329-383)||(48819421-48819475)
chr1 (329-382)||(41196621-41196674)
chr1 (329-386)||(42367072-42367129)
chr1 (329-384)||(1565284-1565338)
chr1 (329-386)||(391132-391189)
chr1 (329-386)||(37329319-37329376)
chr1 (330-383)||(37712190-37712243)
chr1 (330-386)||(4068238-4068294)
chr1 (329-365)||(9572712-9572748)
chr1 (329-385)||(28870325-28870381)
chr1 (238-321)||(19722177-19722260)
chr1 (332-383)||(26988273-26988324)
chr1 (330-385)||(35897527-35897582)
chr1 (338-385)||(45267593-45267640)
chr1 (329-367)||(15235087-15235125)
chr1 (329-383)||(15515257-15515311)
chr1 (329-367)||(17814312-17814350)
chr1 (329-367)||(19220295-19220333)
chr1 (329-367)||(20169247-20169285)
chr1 (233-319)||(22776452-22776538)
chr1 (329-366)||(5347276-5347313)
chr1 (330-367)||(13039070-13039107)
chr1 (329-366)||(15791505-15791542)
chr1 (329-366)||(17628352-17628389)
chr1 (329-385)||(4068080-4068136)
chr1 (330-366)||(32497199-32497235)
chr1 (329-365)||(42363720-42363756)
chr1 (329-365)||(42591504-42591540)
[»] chr3 (26 HSPs)
chr3 (329-382)||(53261678-53261731)
chr3 (252-322)||(21530220-21530290)
chr3 (329-386)||(40240485-40240541)
chr3 (329-367)||(3876189-3876227)
chr3 (329-365)||(43376817-43376853)
chr3 (329-367)||(3645424-3645462)
chr3 (329-367)||(29614315-29614353)
chr3 (329-383)||(30321640-30321694)
chr3 (331-365)||(32901076-32901110)
chr3 (329-367)||(33946607-33946645)
chr3 (331-385)||(43971755-43971809)
chr3 (329-383)||(46573364-46573418)
chr3 (340-382)||(50540426-50540468)
chr3 (329-366)||(4257225-4257262)
chr3 (330-367)||(17752057-17752094)
chr3 (330-367)||(19053377-19053414)
chr3 (330-367)||(31787645-31787682)
chr3 (330-367)||(32983217-32983254)
chr3 (332-365)||(33946478-33946511)
chr3 (329-386)||(43079841-43079898)
chr3 (265-302)||(51884727-51884764)
chr3 (329-385)||(4974276-4974332)
chr3 (329-365)||(4974433-4974469)
chr3 (329-365)||(38524210-38524246)
chr3 (330-366)||(51409377-51409413)
chr3 (293-321)||(51885459-51885487)
[»] scaffold0157 (1 HSPs)
scaffold0157 (329-385)||(24869-24925)
[»] scaffold0048 (1 HSPs)
scaffold0048 (331-384)||(58777-58830)
[»] scaffold1367 (1 HSPs)
scaffold1367 (329-388)||(1180-1239)
[»] scaffold0029 (1 HSPs)
scaffold0029 (238-322)||(60497-60581)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 9e-99; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 19906676 - 19906393
Alignment:
Q  8 gatgatgttggaggatggagatggccaacggggaggaggaggaggcggtggcgactaggttttgttggaggtgaaagcttctcgttgaagagaggaaaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19906676 gatgatgttggaggatggagatggccaacggggaggaggaggaggcggcggcgactaggttttgttggaggtgaaagcttctcgttgaagagaggaaaag 19906577  T
Q  108 aa--------tatgaagcgtgtgtgtgttttacgtgtgacccgagcagatgtgaagaaaaggagtcccactttacactttctgaggggttttatgagaat 199  Q
    ||        ||||||| ||| ||||||||||  | || || |  |||||||||||||||||||| ||||||||||||||   |||||||||||||||||    
T  19906576 aagaaaagaatatgaagagtgcgtgtgttttatctttggccagcccagatgtgaagaaaaggagttccactttacactttgccaggggttttatgagaat 19906477  T
Q  200 cgggtcccaccttttctaaagtcattttcccaagggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctg 283  Q
     |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19906476 tgggtcccatcttttctaaagtcattttgccaggggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctg 19906393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 191 - 320
Target Start/End: Complemental strand, 23737682 - 23737554
Alignment:
Q  191 tatgagaatcgggtcccaccttttctaaagtcattttcccaagggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattat 290  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  23737682 tatgagaatcgggtcccaccttttctaaagtcattttgcca-gggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctggcattgt 23737584  T
Q  291 tccctggcaatatgcaacatttcttgtagt 320  Q
    ||||||||||||||||| ||||||||||||    
T  23737583 tccctggcaatatgcaagatttcttgtagt 23737554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 22129034 - 22129117
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  22129034 tccctggcatggctcctggcaaatttgccaggagttcttgctcctggcattattccctggcaatatacaagatttcttgtagtg 22129117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 19209431 - 19209498
Alignment:
Q  191 tatgagaatcgggtcccaccttttctaaagtcattttcccaagggcatccctggcattgctcctggca 258  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  19209431 tatgagaatcgggtcccaccttttctaaagtcattttgccaggggcatccctggcattgctcctggca 19209498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 5023610 - 5023693
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    |||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||| |||||| ||| |||||||||||||    
T  5023610 tccctggcatggctcctggcaaattttccaggagttcttgctcttggcattattccctgacaatatacaagatttcttgtagtg 5023693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 40452446 - 40452388
Alignment:
Q  324 aatatcttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||    
T  40452446 aatagcttatttatttgcataagctatttttcataagctcaaaaataagccaatccaaa 40452388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 34369775 - 34369715
Alignment:
Q  261 tttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    ||||||||||||||||||||||| |||| ||||||| |||||| ||| |||||||||||||    
T  34369775 tttgccaggagttcttgctcctggcattgttccctgacaatatacaagatttcttgtagtg 34369715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 6125408 - 6125462
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||    
T  6125408 cttatttatttgcataagctatttttcataagttcaaaaagaagtcaatccaaac 6125462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 40697128 - 40697182
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||    
T  40697128 cttatttatttgtataagctatttttcataagctcaaaaataagccaatccaaac 40697182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 42558681 - 42558627
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||| |||||    
T  42558681 cttatttatttgcataagctatttttcataagctcaaaaataagccaattcaaac 42558627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 34607410 - 34607341
Alignment:
Q  252 cctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    ||||||||||||||| |||||| ||||||||| |||| |||||| ||||||  ||| |||||||||||||    
T  34607410 cctggcaaatttgcctggagtttttgctcctggcatttttccctagcaatacacaagatttcttgtagtg 34607341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 1576754 - 1576810
Alignment:
Q  331 tatttagttgcataagcta-tttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  1576754 tatttatttgcataagctaatttttcataagctcaaaaataagccaatccaaacggg 1576810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 1608061 - 1608005
Alignment:
Q  331 tatttagttgcataagcta-tttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  1608061 tatttatttgcataagctaatttttcataagctcaaaaataagccaatccaaacggg 1608005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 1868972 - 1869020
Alignment:
Q  338 ttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||||||||||||||||||||| |||  |||||||||||||||||    
T  1868972 ttgcataagctatttttcataagctcgaaaataagccaatccaaacggg 1869020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 10537190 - 10537134
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    ||||| || |||||||||||||||||||||| |||||||  ||||||||||||||||    
T  10537190 cttatatatttgcataagctatttttcataaactcaaaaataagccaatccaaacgg 10537134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 13739351 - 13739407
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||||||| |||||||||||| |||||||  ||||||||||||||||    
T  13739351 cttatttatttgcataagttatttttcataaactcaaaaataagccaatccaaacgg 13739407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 29922153 - 29922097
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| |||||||||||||||||||||| |||||||  ||||||||| ||||||    
T  29922153 cttatttatttgcataagctatttttcataaactcaaaaataagccaatcaaaacgg 29922097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 35536966 - 35537022
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| |||||||||||||||||||||| |||||||  ||| ||||||||||||    
T  35536966 cttatttatttgcataagctatttttcataatctcaaaaataagtcaatccaaacgg 35537022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 22573759 - 22573814
Alignment:
Q  327 atcttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||||| |||||||  |||||||||||||||||||||  |||||||||||||    
T  22573759 atcttatttatttgcataccctatttttcataagctcaaaaataagccaatccaaa 22573814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 17868167 - 17868113
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacg 384  Q
    ||||||| |||||||||||||||| |||||||| ||||  |||||||||||||||    
T  17868167 ttatttatttgcataagctattttccataagctaaaaaataagccaatccaaacg 17868113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 19209487 - 19209533
Alignment:
Q  275 ttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    ||||||||| |||| |||||||||||||||||| |||||||||||||    
T  19209487 ttgctcctggcattgttccctggcaatatgcaagatttcttgtagtg 19209533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 387
Target Start/End: Complemental strand, 39154725 - 39154667
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgggg 387  Q
    |||||||| ||||||||||||||||||| ||| |||| |  ||||||||||||||||||    
T  39154725 cttatttatttgcataagctatttttcagaagttcaataataagccaatccaaacgggg 39154667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 2577391 - 2577354
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaa 367  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  2577391 ttatttatttgcataagctatttttcataagctcaaaa 2577354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 6150922 - 6150967
Alignment:
Q  338 ttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||||    
T  6150922 ttgcataagttatttttcataagctcaaaaagaagcaaatccaaac 6150967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 14243947 - 14244003
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||| ||||||||||||||||||||||||  ||| | ||||||||||    
T  14243947 cttatttatttgcaaaagctatttttcataagctcaaaaataagtctatccaaacgg 14244003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 15122657 - 15122697
Alignment:
Q  327 atcttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  15122657 atcttatttatttacataagctatttttcataagctcaaaa 15122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 41125796 - 41125852
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    ||||| || ||||| |||||||||||||||| |||||||  ||||||||||||||||    
T  41125796 cttatatatttgcaaaagctatttttcataaactcaaaaataagccaatccaaacgg 41125852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 34369809 - 34369774
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagtt 273  Q
    |||||||||| |||||||||||||||||||||||||    
T  34369809 tccctggcatagctcctggcaaatttgccaggagtt 34369774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 589275 - 589313
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  589275 cttatttatttgcataagctattttttataagctcaaaa 589313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 5559883 - 5559833
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatcc 379  Q
    |||||||| |||||||||||||||||||  |||||||||  ||||||||||    
T  5559883 cttatttatttgcataagctatttttcacgagctcaaaaataagccaatcc 5559833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 387
Target Start/End: Original strand, 28625602 - 28625659
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgggg 387  Q
    |||||||| ||||||||| ||||||||||||||| ||||  |||||||| |||||||||    
T  28625602 cttatttatttgcataagttatttttcataagct-aaaaataagccaattcaaacgggg 28625659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 29659182 - 29659220
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  29659182 cttatttatttgcataagctctttttcataagctcaaaa 29659220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 41059753 - 41059699
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| |||||||| || ||||||||||||||||||  ||||| ||||||||    
T  41059753 cttatttatttgcataaactgtttttcataagctcaaaaataagcccatccaaac 41059699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 2878641 - 2878584
Alignment:
Q  329 cttatttagttgcataagctattttt-cataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| || |||||||||||||| |||||||| ||||  ||||||||||||||||    
T  2878641 cttatttatttacataagctattttttcataagctaaaaaataagccaatccaaacgg 2878584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 11706875 - 11706826
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatc 378  Q
    |||||||| ||||||||||||||||| ||||||| ||||  |||||||||    
T  11706875 cttatttatttgcataagctatttttgataagctaaaaaataagccaatc 11706826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 12467390 - 12467443
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||| ||||||||| |||||||||||| || ||||  |||||||||||||    
T  12467390 cttatttatttgcataagttatttttcataacctaaaaaataagccaatccaaa 12467443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 20458522 - 20458485
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaa 366  Q
    |||||||| || ||||||||||||||||||||||||||    
T  20458522 cttatttatttacataagctatttttcataagctcaaa 20458485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 22201895 - 22201838
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||| |||| |||||||||||||||| ||||  |||| ||||||||||||    
T  22201895 cttatttatttgtataaactatttttcataagctaaaaaataagcaaatccaaacggg 22201838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 27806038 - 27806095
Alignment:
Q  330 ttatttagttgcataagcta-tttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||| |||||||||||| ||||| ||||||| ||||  |||||||||||||||||    
T  27806038 ttatttatttgcataagctattttttaataagctaaaaagtaagccaatccaaacggg 27806095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 35083361 - 35083418
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| |||||||| |||||| |||||| |||||||  || ||||||||||||||    
T  35083361 cttatttatttgcataaactatttatcataaactcaaaaataaaccaatccaaacggg 35083418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 2577481 - 2577537
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||| ||||||||||| ||||  ||||||| ||||  |||||||||||||||||    
T  2577481 ttatttatttgcataagctgttttggataagctaaaaaataagccaatccaaacggg 2577537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 15879691 - 15879607
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtga 322  Q
    ||||||||||| ||||||  |  ||| ||||||| |  |||||||| ||||||||||||| || | |||| ||||||||||||||    
T  15879691 tccctggcattactcctgaaattttttccaggagctgatgctcctgacattattccctggaaaaacgcaagatttcttgtagtga 15879607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 41534759 - 41534803
Alignment:
Q  338 ttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||| ||| |||||||||||||||||||||  |||||||||||||    
T  41534759 ttgcgtaaactatttttcataagctcaaaaataagccaatccaaa 41534803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 321 - 423
Target Start/End: Original strand, 10383577 - 10383679
Alignment:
Q  321 gacaatatcttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggggattaagtaaatagaaaggcaatgaaagtatagt 420  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10383577 gacaatatcttatttatttgcataaactatttttcataagctcaaaacgaagccaatccaaacggggattaagtaaatagaaaggcaatgaaagtatagt 10383676  T
Q  421 ttt 423  Q
    |||    
T  10383677 ttt 10383679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 12762950 - 12763045
Alignment:
Q  8 gatgatgttggaggatggagatggccaacggggaggaggaggaggcggtggcgactaggttttgttggaggtgaaagcttctcgttgaagagagga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12762950 gatgatgttggaggatggagatggccaacggggaggaggaggaggcggcggcgactaggttttgttggaggtgaaagcttctcgttgaagagagga 12763045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 22691028 - 22691108
Alignment:
Q  241 ctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    ||||||| |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22691028 ctggcatagctcctggaaaatttgacagcagttcttgctcctggcattattccctggcaatatgcaacatttcttgtagtg 22691108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 25908416 - 25908473
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| |||||||||| ||||||||||| |||||||  |||||||||||||||||    
T  25908416 cttatttatttgcataagccatttttcataacctcaaaaataagccaatccaaacggg 25908473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 29378767 - 29378824
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| |||||||||||||||||||||| |||||||  ||| |||||||||||||    
T  29378767 cttatttatttgcataagctatttttcataaactcaaaaataagtcaatccaaacggg 29378824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 39279552 - 39279605
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||| ||| ||||||||||||||||||||||||||  |||||||||||||    
T  39279552 cttatttatttgtataagctatttttcataagctcaaaatcaagccaatccaaa 39279605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 33204956 - 33205012
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||||||| ||||||||||||||| ||||  ||||||||||||||||    
T  33204956 cttatttatttgcataagatatttttcataagctaaaaaataagccaatccaaacgg 33205012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 34923055 - 34923110
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacg 384  Q
    |||||||| ||||||||||||||||| ||||||||||||  |||||||| ||||||    
T  34923055 cttatttatttgcataagctattttttataagctcaaaaataagccaattcaaacg 34923110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 29390515 - 29390461
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| |||||||| |||||||||||||||||||||  ||| ||||||||||    
T  29390515 cttatttatttgcataaactatttttcataagctcaaaaataagtcaatccaaac 29390461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 33288039 - 33287985
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||| |||||||| |||||||||||||||||  ||||||||||||||    
T  33288039 cttatttatttggataagctagttttcataagctcaaaaataagccaatccaaac 33287985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 386
Target Start/End: Original strand, 38372683 - 38372737
Alignment:
Q  332 atttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||| |||||| |||||||||||||||||||||||  || ||||||||||||||    
T  38372683 atttatttgcattagctatttttcataagctcaaaaataacccaatccaaacggg 38372737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 40629388 - 40629343
Alignment:
Q  338 ttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||    
T  40629388 ttgcctaagctatttttcataagctcaaaaataagccaatccaaac 40629343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 44613437 - 44613401
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| ||||||||||||||||||||||||||||    
T  44613437 cttatttatttgcataagctatttttcataagctcaa 44613401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 387
Target Start/End: Original strand, 22032884 - 22032942
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagc-caatccaaacgggg 387  Q
    |||||||| ||||||||||| ||||||||||||||||||  |||| ||||||||||||||    
T  22032884 cttatttatttgcataagctttttttcataagctcaaaa-taagctcaatccaaacgggg 22032942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 47511168 - 47511223
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||  ||||||||||||||||||||| |||||||  || |||||||||||||    
T  47511168 ttatttaactgcataagctatttttcataacctcaaaaataaaccaatccaaacgg 47511223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 991621 - 991659
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  991621 cttatttatttacataagctatttttcataagctcaaaa 991659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 6406833 - 6406779
Alignment:
Q  327 atcttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaa 381  Q
    |||||||||| ||| ||||| ||||||||||||||||||||  ||| ||||||||    
T  6406833 atcttatttatttgtataagttatttttcataagctcaaaaataagtcaatccaa 6406779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 16932995 - 16933049
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacg 384  Q
    ||||||||||||||||| ||||||  ||||||||||||  |||| ||||||||||    
T  16932995 ttatttagttgcataagttattttatataagctcaaaaataagctaatccaaacg 16933049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 16938378 - 16938432
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacg 384  Q
    ||||||||||||||||| ||||||  ||||||||||||  |||| ||||||||||    
T  16938378 ttatttagttgcataagttattttatataagctcaaaaataagctaatccaaacg 16938432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 18837243 - 18837189
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||| ||| |||| |||||||||||||  ||||||||||||||    
T  18837243 cttatttatttgcatatgctgttttgcataagctcaaaaataagccaatccaaac 18837189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 38372579 - 38372525
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||||||| |||| |||||||||||||  ||| ||||||||||    
T  38372579 cttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaac 38372525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 1312236 - 1312273
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaa 367  Q
    ||||||| || |||||||||||||||||||||||||||    
T  1312236 ttatttatttacataagctatttttcataagctcaaaa 1312273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 18704360 - 18704307
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||| ||||||||||||||| |||||||| |||||  ||||||| |||||    
T  18704360 cttatttatttgcataagctatttctcataagcacaaaaacaagccaacccaaa 18704307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 18765074 - 18765021
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    ||||||| |||| |||| ||||||||||||||| ||||  ||||||||||||||    
T  18765074 ttatttatttgcgtaagttatttttcataagctaaaaaataagccaatccaaac 18765021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 26331887 - 26331944
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||||||||||||||||||| |||  |  |||||||| ||||||||    
T  26331887 cttatttatttgcataagctatttttcataagttcattaataagccaatacaaacggg 26331944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 40629482 - 40629535
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    ||||||| ||| ||||||| |||| |||||||||||||  ||||||||||||||    
T  40629482 ttatttatttggataagctgttttgcataagctcaaaaataagccaatccaaac 40629535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 41037846 - 41037883
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaa 367  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  41037846 ttatttatttgtataagctatttttcataagctcaaaa 41037883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 5947701 - 5947757
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||| ||||||||||||||||| |||| ||||| |  ||||||||| |||||||    
T  5947701 ttatttatttgcataagctattttttataaactcaacaataagccaatcgaaacggg 5947757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 11400753 - 11400681
Alignment:
Q  250 ctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtga 322  Q
    ||||| ||||||||||||||||||||||| |||  | |||||| || || |  ||||| ||||||||||||||    
T  11400753 ctcctagcaaatttgccaggagttcttgcacctagctttattctctagctaactgcaatatttcttgtagtga 11400681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 43818842 - 43818806
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  43818842 cttatttatttgcataagctctttttcataagctcaa 43818806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 7405165 - 7405260
Alignment:
Q  8 gatgatgttggaggatggagatggccaacggggaggaggaggaggcggtggcgactaggttttgttggaggtgaaagcttctcgttgaagagagga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7405165 gatgatgttggaggatggagatggccaacggggaggaggaggaggcggcggcgactaggttttgttggaggtgaaagcttctcgttgaagagagga 7405260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 19830980 - 19831054
Alignment:
Q  244 gcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgta 318  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| || ||||||||||    
T  19830980 gcatagctcctggcaaattttccaggagttcttgctcctggcattgttccctggcaatatgaaagatttcttgta 19831054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 35071392 - 35071338
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||    
T  35071392 cttatttatttgcataagctatttttcataagctaaaaaataagccaatccaaac 35071338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 6752934 - 6752970
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| ||||||||||||||||||||||||||||    
T  6752934 cttatttatttgcataagctatttttcataagctcaa 6752970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 388
Target Start/End: Original strand, 6776930 - 6776989
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagc-caatccaaacgggga 388  Q
    |||||||| |||||||||||||||||||||||||  |||| |||| |||||||||||||||    
T  6776930 cttatttatttgcataagctatttttcataagct-taaactaagctcaatccaaacgggga 6776989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 23239369 - 23239405
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| ||||||||||||||||||||||||||||    
T  23239369 cttatttatttgcataagctatttttcataagctcaa 23239405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 29623444 - 29623404
Alignment:
Q  327 atcttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  29623444 atcttatttatttgcataagctatttttcataaactcaaaa 29623404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 388
Target Start/End: Original strand, 4808705 - 4808752
Alignment:
Q  341 cataagctatttttcataagctcaaaacgaagccaatccaaacgggga 388  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||||    
T  4808705 cataagctatttttcataagctcaaaatgagctcaatccaaacgggga 4808752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 20776477 - 20776528
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaa 381  Q
    ||||||| ||||||||| ||||||||||| ||||||||  ||||||||||||    
T  20776477 ttatttatttgcataagttatttttcatatgctcaaaaataagccaatccaa 20776528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 9202351 - 9202309
Alignment:
Q  341 cataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||||||||||||||||| ||||  ||||||||||||||    
T  9202351 cataagctatttttcataagctaaaaaataagccaatccaaac 9202309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 12816865 - 12816827
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  12816865 cttatttatttgcataaactatttttcataagctcaaaa 12816827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 29052454 - 29052492
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  29052454 cttatttatttacataagctatttttcataagctcaaaa 29052492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 32165225 - 32165187
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  32165225 cttatttatttacataagctatttttcataagctcaaaa 32165187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 1172481 - 1172525
Alignment:
Q  338 ttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    ||||| ||||||||||||||||||||||||  |||| ||||||||    
T  1172481 ttgcaaaagctatttttcataagctcaaaaataagctaatccaaa 1172525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 388
Target Start/End: Original strand, 6758750 - 6758809
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagc-caatccaaacgggga 388  Q
    |||||||| ||||||||||||||||||| ||||| ||||  |||| |||||||||||||||    
T  6758750 cttatttatttgcataagctatttttcagaagcttaaaa-taagctcaatccaaacgggga 6758809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 367
Target Start/End: Original strand, 15930613 - 15930649
Alignment:
Q  331 tatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||| |||||||||||| |||||||||||||||||    
T  15930613 tatttatttgcataagctaattttcataagctcaaaa 15930649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 21025183 - 21025127
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||||||||||||||| ||||||| ||||  ||  ||||||||||||    
T  21025183 cttatttatttgcataagctatttttgataagctaaaaaataaatcaatccaaacgg 21025127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 23239268 - 23239212
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||| ||||| ||||||||||||||||||||  ||  ||||||||||||    
T  23239268 cttatttatttgtataagttatttttcataagctcaaaataaactcaatccaaacgg 23239212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 34223488 - 34223452
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| || |||||||||||||||||||||||||    
T  34223488 cttatttatttacataagctatttttcataagctcaa 34223452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 28952224 - 28952139
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtgac 323  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  28952224 tccctggcatggctcctggcaaatttgccaggagttcttgctcctggcattattccctggcaatatacaagatttcttgtagtgac 28952139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 17000509 - 17000441
Alignment:
Q  214 tctaaagtcattttcccaagggcatccctggcattgctcctggcaaatttgccaggagttcttgctcct 282  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  17000509 tctaaagtcattttgcgaggggcatccctggcattgctcctggtaaatttgttaggagttcttgctcct 17000441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 10213817 - 10213871
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||||||||||||||||||||||||||  || |||||||||||    
T  10213817 cttatttatttgcataagctatttttcataagctcaaaaataatccaatccaaac 10213871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 28879177 - 28879234
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||||||||||||||||||||| ||||  ||| |||||||||||||    
T  28879177 cttatttatttgcataagctatttttcataagctaaaaaataagtcaatccaaacggg 28879234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 32975809 - 32975866
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||    
T  32975809 cttatttatttgcataagctatttttcataagctcaaaaacaagacaatctaaacggg 32975866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 10298882 - 10298834
Alignment:
Q  338 ttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||    
T  10298882 ttgcataagctattattcataagctcaaaaataagccaatccaaacggg 10298834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 32212979 - 32212923
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||||||||||||||||||||||  ||||  ||||||||||||||||    
T  32212979 cttatttatttgcataagctatttttcataagcaaaaaaataagccaatccaaacgg 32212923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 385
Target Start/End: Complemental strand, 10480069 - 10480026
Alignment:
Q  342 ataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  10480069 ataagctatttttcataagctcaaaaataagccaatccaaacgg 10480026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 386
Target Start/End: Complemental strand, 24350485 - 24350426
Alignment:
Q  327 atcttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||||| |||||||||||| |||||||||||||||||  ||| || ||||||||||    
T  24350485 atcttatttatttgcataagctagttttcataagctcaaaaataagtcattccaaacggg 24350426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 13131565 - 13131622
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||| ||||||||||||||||| ||||  ||| |||||||||||||    
T  13131565 cttatttatttgcatatgctatttttcataagcttaaaaataagtcaatccaaacggg 13131622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 11460783 - 11460827
Alignment:
Q  342 ataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||    
T  11460783 ataagctatttttcataagctcaaaaataagtcaatccaaacggg 11460827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 15739838 - 15739755
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    ||||||||||| ||||||||||||||||||||||     ||||||| ||| | ||||||||||   ||||| ||||||||||||    
T  15739838 tccctggcattactcctggcaaatttgccaggagcatcagctcctggcatcaatccctggcaaatcgcaacttttcttgtagtg 15739755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 387
Target Start/End: Complemental strand, 24866915 - 24866857
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagc-caatccaaacgggg 387  Q
    |||||||| ||||||||||| ||||||||||||||||||  |||| ||||||||||||||    
T  24866915 cttatttatttgcataagctctttttcataagctcaaaa-taagctcaatccaaacgggg 24866857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 34286528 - 34286473
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacg 384  Q
    |||||||| |||||||| |||||||||||||||||||||  ||| |||| ||||||    
T  34286528 cttatttatttgcataacctatttttcataagctcaaaaataagtcaattcaaacg 34286473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 25465811 - 25465758
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| |||||||||||||||||||||| || | || |||||||||||||||    
T  25465811 cttatttatttgcataagctatttttcataa-cttataaagaagccaatccaaac 25465758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 28280831 - 28280869
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  28280831 cttatttatttgcataagctctttttcataagctcaaaa 28280869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 35055543 - 35055581
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  35055543 cttatttatttacataagctatttttcataagctcaaaa 35055581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 37410877 - 37410839
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  37410877 cttatttatttacataagctatttttcataagctcaaaa 37410839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 41145360 - 41145322
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  41145360 cttatttatttgcataaactatttttcataagctcaaaa 41145322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 42102228 - 42102266
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  42102228 cttatttatttacataagctatttttcataagctcaaaa 42102266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 15763219 - 15763264
Alignment:
Q  338 ttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||||||||||||||||| |||||||  ||| ||||||||||    
T  15763219 ttgcataagctatttttcataaactcaaaaataagtcaatccaaac 15763264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 16972319 - 16972266
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    ||||||| ||||||||||||||||  ||||||||||||  ||| ||||||||||    
T  16972319 ttatttatttgcataagctattttgaataagctcaaaattaagtcaatccaaac 16972266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 24087293 - 24087350
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||||||||||||||||   |||||||  ||| |||||||||||||    
T  24087293 cttatttatttgcataagctatttttcattcactcaaaaataagtcaatccaaacggg 24087350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 32131461 - 32131408
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||| ||||||||||| |||| |||||||||||||  ||| |||||||||    
T  32131461 cttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaa 32131408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 9131091 - 9131059
Alignment:
Q  330 ttatttagttgcataagctatttttcataagct 362  Q
    ||||||| |||||||||||||||||||||||||    
T  9131091 ttatttatttgcataagctatttttcataagct 9131059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 367
Target Start/End: Original strand, 9788933 - 9788969
Alignment:
Q  331 tatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||| || |||||||||||||||||||||||||||    
T  9788933 tatttattttcataagctatttttcataagctcaaaa 9788969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 19925679 - 19925715
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| || |||||||||||||||||||||||||    
T  19925679 cttatttatttacataagctatttttcataagctcaa 19925715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 42363381 - 42363437
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||||||||||||||  |||||||| |||  |||| |||||||||||    
T  42363381 cttatttatttgcataagctattttatataagctctaaaataagctaatccaaacgg 42363437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 183 - 321
Target Start/End: Complemental strand, 11351 - 11223
Alignment:
Q  183 aggggttttatgagaatcgggtcccaccttttctaaagtcattttcccaagggcatccctggcattgctcctggcaaatttgccaggagttcttgctcct 282  Q
    |||||||||||||||||||||||||||          |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11351 aggggttttatgagaatcgggtcccac----------gtcattttcccaggggcatccctggcattgctcctggcaaatttgccaagagttcttgctcct 11262  T
Q  283 gccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    | |||  ||||||||| |  |||| | ||||||||||||    
T  11261 ggcatagttccctggctaattgcatcttttcttgtagtg 11223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 220 - 321
Target Start/End: Original strand, 23791 - 23892
Alignment:
Q  220 gtcattttcccaagggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtag 319  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| | |  |||| | ||||||||||    
T  23791 gtcattttcccaggggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctggcatagttccctgactaattgcatcttttcttgtag 23890  T
Q  320 tg 321  Q
    ||    
T  23891 tg 23892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 7622272 - 7622189
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||  ||| |||||||||||||    
T  7622272 tccctggcatagctcctggcaaatttgccaggagtttttgctcctggcatttttccctggcaatacacaagatttcttgtagtg 7622189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 187 - 283
Target Start/End: Complemental strand, 53177599 - 53177504
Alignment:
Q  187 gttttatgagaatcgggtcccaccttttctaaagtcattttcccaagggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctg 283  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| ||| ||||||| |||| |||||||| || |||||||||||||||| |||||||||    
T  53177599 gttttatgagaatcggg-cccactttttctaaagtaattttgccaggggcatctctggtattgctccaggtaaatttgccaggagttgttgctcctg 53177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 10802668 - 10802752
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtga 322  Q
    ||||||||||| |||||| ||||||||||||||| |  |||||| | |||||||||||||||| | ||||| |||||||||||||    
T  10802668 tccctggcattactcctgacaaatttgccaggagctgatgctcccgacattattccctggcaaaacgcaacttttcttgtagtga 10802752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 48591388 - 48591335
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||||||||    
T  48591388 cttatttatttgcataagctatttttcataagctcaaaaataagccaatccaaa 48591335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 3564329 - 3564383
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacg 384  Q
    ||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||    
T  3564329 ttatttatttgcataagctatttttcataagctcaaaaataagtcaatccaaacg 3564383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 17222951 - 17223005
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||    
T  17222951 cttatttatttgaataagctatttttcataagctcaaaaataagccaatccaaac 17223005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 23297459 - 23297405
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| |||||||||||||||| |||||||||||||  ||||||||||||||    
T  23297459 cttatttatttgcataagctattttgcataagctcaaaaataagccaatccaaac 23297405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 36741026 - 36741080
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||    
T  36741026 cttatttatttgcataagctatttttcataagctaaaaaataagccaatccaaac 36741080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 42153126 - 42153069
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| |||||||||||||||| | |||||||||||  |||||||||||||||||    
T  42153126 cttatttatttgcataagctattttacgtaagctcaaaaataagccaatccaaacggg 42153069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 12495608 - 12495552
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| |||||||||||| |||||||||||||||||  ||| ||||||||||||    
T  12495608 cttatttatttgcataagctacttttcataagctcaaaaataagacaatccaaacgg 12495552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 48667792 - 48667848
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| |||||||||||||||||||| |||| ||||  ||||||||||||||||    
T  48667792 cttatttatttgcataagctatttttcatgagcttaaaaataagccaatccaaacgg 48667848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 7777544 - 7777627
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    |||||||||||| |||| | |||||||||||||||||||||||||| |||  |||| |||| |  ||||  |||||||||||||    
T  7777544 tccctggcattggtcctagtaaatttgccaggagttcttgctcctggcatagttccttggctaattgcatgatttcttgtagtg 7777627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 28074484 - 28074539
Alignment:
Q  327 atcttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||||| |||||||||||||||||||||| || ||||  |||||||||||||    
T  28074484 atcttatttatttgcataagctatttttcataaactaaaaaataagccaatccaaa 28074539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 18630859 - 18630821
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  18630859 cttatttatttgcataagctatttttcataagctcaaaa 18630821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 23297557 - 23297595
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  23297557 cttatttatttgcataagctatttttcataagctcaaaa 23297595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 11298705 - 11298742
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaa 367  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  11298705 ttatttatttgcataagctatttttcataagctcaaaa 11298742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 28663694 - 28663747
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||| |||||||||||| |||||||||||||||||||||  ||| |||||||||    
T  28663694 cttaattagttgcataaactatttttcataagctcaaaaataagtcaatccaaa 28663747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 30956806 - 30956863
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||||||||||||||||||||| ||||  ||| ||||||| |||||    
T  30956806 cttatttatttgcataagctatttttcataagctaaaaaataagtcaatccatacggg 30956863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 34742479 - 34742410
Alignment:
Q  252 cctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    |||||||||||||||||| |||  |||||||| ||| ||| |||||||| |||||  |||||||||||||    
T  34742479 cctggcaaatttgccaggggttgatgctcctggcataatttcctggcaaaatgcaggatttcttgtagtg 34742410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 38345786 - 38345730
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| || |||||||||||||| ||||||||||||  |||||||||||||||||    
T  38345786 cttatttatttacataagctattttt-ataagctcaaaaataagccaatccaaacggg 38345730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 43699548 - 43699605
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||| ||||| | ||||||||||||||||||  |||||||||||||||||    
T  43699548 cttatttatttgtataagttgtttttcataagctcaaaaataagccaatccaaacggg 43699605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 3794107 - 3794024
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    |||||||| || |||||||||||||| ||||| |||| |||||||| ||| ||||||| || |  ||||  |||||||||||||    
T  3794107 tccctggctttactcctggcaaattttccaggggttcatgctcctggcataattccctagctaattgcaggatttcttgtagtg 3794024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 7792336 - 7792419
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    |||||||||||| || | | |||||||||||||||||||||||||| |||  | ||||||| |  ||||  |||||||||||||    
T  7792336 tccctggcattggtcatagtaaatttgccaggagttcttgctcctggcatagtaccctggctaattgcatgatttcttgtagtg 7792419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 15179939 - 15179977
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  15179939 cttatttatttacataagctatttttcataagctcaaaa 15179977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 35405805 - 35405843
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  35405805 cttatttatttgcataagctatttttcataagctaaaaa 35405843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 22273814 - 22273761
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||| |||||||||||||| | |||||||||||||  ||| |||||||||    
T  22273814 cttatttatttgcataagctattatgcataagctcaaaaataagtcaatccaaa 22273761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 32628912 - 32628953
Alignment:
Q  341 cataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||||||||||||||| ||||||  |||||||||||||    
T  32628912 cataagctatttttcataaggtcaaaaataagccaatccaaa 32628953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 365
Target Start/End: Original strand, 41229028 - 41229061
Alignment:
Q  332 atttagttgcataagctatttttcataagctcaa 365  Q
    ||||| ||||||||||||||||||||||||||||    
T  41229028 atttatttgcataagctatttttcataagctcaa 41229061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 42617194 - 42617157
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaa 366  Q
    |||||||| || ||||||||||||||||||||||||||    
T  42617194 cttatttatttacataagctatttttcataagctcaaa 42617157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 48687057 - 48687109
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    ||||||| |||||||||||||||| |||||||||||||  ||| ||||||||||    
T  48687057 ttatttatttgcataagctatttt-cataagctcaaaaataaggcaatccaaac 48687109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 488348 - 488292
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| || |||||||||||||| ||||||| ||||  ||| ||||||||||||    
T  488348 cttatttatttccataagctattttttataagcttaaaagtaagtcaatccaaacgg 488292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 10994920 - 10994836
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtga 322  Q
    ||||||| ||| |||||||||||||||||| |||     ||||||  ||||||| |||||||| | ||||| |||||||||||||    
T  10994920 tccctggtattactcctggcaaatttgccaagagcatcagctcctaacattatttcctggcaaaacgcaacttttcttgtagtga 10994836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 34633419 - 34633363
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||| ||||||||| | |||| |||||||| ||||  |||||||||||||||||    
T  34633419 ttatttatttgcataagttgttttgcataagctaaaaaataagccaatccaaacggg 34633363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 40699376 - 40699320
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||| ||||||||||| |||| ||||||||||| |  ||||||||||| |||||    
T  40699376 ttatttatttgcataagctgttttgcataagctcaataataagccaatccagacggg 40699320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 30934657 - 30934587
Alignment:
Q  250 ctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagt 320  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  30934657 ctcctggtaaatttgctaggagttcttgctcctggcattattccctggcaatatgcaacatttcttatagt 30934587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 28574852 - 28574778
Alignment:
Q  247 ttgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    |||| |||||||||||||||||||||||||||||||  ||||||| | || ||||||||||||||||||||||||    
T  28574852 ttgcccctggcaaatttgccaggagttcttgctcctagcattatttcatgacaatatgcaacatttcttgtagtg 28574778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 40070694 - 40070756
Alignment:
Q  259 aatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    ||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  40070694 aattttccaggagttcttgctcctggcattattccctggccatatgcaacatttcttgtagtg 40070756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 5903660 - 5903714
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| |||||||||||||||||||| |||||||||  ||||||||||||||    
T  5903660 cttatttatttgcataagctatttttcatgagctcaaaaataagccaatccaaac 5903714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 5903737 - 5903791
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| |||||||||||||||||||| |||||||||  ||||||||||||||    
T  5903737 cttatttatttgcataagctatttttcatgagctcaaaaataagccaatccaaac 5903791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 36501479 - 36501425
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||||||||||||||| ||||||||||  ||||||||||||||    
T  36501479 cttatttatttgcataagctatttttcacaagctcaaaaataagccaatccaaac 36501425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 4533444 - 4533500
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||||||||||||||||||||||||||||  |||  |||||||||||    
T  4533444 cttatttatttgcataagctatttttcataagctcaaaaataagttaatccaaacgg 4533500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 6661134 - 6661218
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtga 322  Q
    |||||||| || |||||||||||||| ||||| |||| |||||||| ||| |||||||||| |  ||||  ||||||||||||||    
T  6661134 tccctggctttactcctggcaaatttcccaggggttcatgctcctggcataattccctggctaattgcaggatttcttgtagtga 6661218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 8832579 - 8832635
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||||||||||||||||||||||| ||||  ||| ||||||||||||    
T  8832579 cttatttatttgcataagctatttttcataagctaaaaaataagtcaatccaaacgg 8832635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 33321275 - 33321223
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    ||||||| |||||||||||||||| |||||||||||||  |||||||||||||    
T  33321275 ttatttatttgcataagctattttacataagctcaaaaataagccaatccaaa 33321223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 37409763 - 37409822
Alignment:
Q  327 atcttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||| ||| ||| ||||||||||||||||||||||||||  |||||| ||||||||||    
T  37409763 atcttagttacttgtataagctatttttcataagctcaaaaataagccagtccaaacggg 37409822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 12442924 - 12442981
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||||  |||||||||| ||||||||||||||||||  |||| ||||||||||||    
T  12442924 cttatttatctgcataagctgtttttcataagctcaaaattaagctaatccaaacggg 12442981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 38216043 - 38215987
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||| ||||||||||| |||| |||||||||||||  ||| |||||||||||||    
T  38216043 ttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaacggg 38215987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 39592369 - 39592409
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacg 369  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  39592369 cttatttctttgcataagctatttttcataagctcaaaacg 39592409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 4027042 - 4027085
Alignment:
Q  324 aatatcttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||    
T  4027042 aatagcttatttatttgcataagctatttttcataagcttaaaa 4027085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 13098025 - 13098063
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  13098025 cttatttatttgcataagctattattcataagctcaaaa 13098063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 22898321 - 22898283
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  22898321 cttatttatttacataagctatttttcataagctcaaaa 22898283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 38216141 - 38216195
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| |||||||||||||||||| |||||| ||||  ||||||||| ||||    
T  38216141 cttatttatttgcataagctatttttcgtaagctaaaaaataagccaatcaaaac 38216195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 755671 - 755638
Alignment:
Q  333 tttagttgcataagctatttttcataagctcaaa 366  Q
    |||| |||||||||||||||||||||||||||||    
T  755671 tttatttgcataagctatttttcataagctcaaa 755638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 2790137 - 2790190
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    ||||||| ||||||||||| |||| |||||||||||||  ||||||| ||||||    
T  2790137 ttatttatttgcataagctgttttgcataagctcaaaaataagccaacccaaac 2790190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 37420028 - 37420081
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||| ||||||||  ||||||||||||||| ||||  |||||||||||||    
T  37420028 cttatttatttgcataaattatttttcataagctaaaaaataagccaatccaaa 37420081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 38010634 - 38010597
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaa 366  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  38010634 cttatttatttgtataagctatttttcataagctcaaa 38010597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 40301373 - 40301316
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||||||| ||||| |||||||| |||  |||| ||||||||||||    
T  40301373 cttatttatttgcataagctgttttttataagctctaaaataagctaatccaaacggg 40301316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 45163849 - 45163792
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||||  |||||||||||||||||||| ||||||||  ||| ||||| |||||||    
T  45163849 cttatttatctgcataagctatttttcatatgctcaaaagtaagtcaatcgaaacggg 45163792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 4090509 - 4090453
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||| ||||||||||| |||| |||||||||||||  |||||||| || |||||    
T  4090509 ttatttatttgcataagctgttttgcataagctcaaaaataagccaattcagacggg 4090453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 21788579 - 21788615
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  21788579 cttatttatttgcataagttatttttcataagctcaa 21788615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 24007913 - 24007969
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||  ||||| ||||||||||||| ||||||  ||||||||||||||||    
T  24007913 cttatttattttaataagttatttttcataagatcaaaagtaagccaatccaaacgg 24007969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 27703523 - 27703574
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||||||| |||| ||||||||||||   ||||||||||||||    
T  27703523 cttatttatttgcataagctgttttgcataagctcaaa---aagccaatccaaac 27703574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 9469537 - 9469462
Alignment:
Q  246 attgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    ||||||||||||||||||||||||||||| |||||||  ||| ||||| ||| || ||||||||||||||||||||    
T  9469537 attgctcctggcaaatttgccaggagttcatgctcctagcataattccgtggtaaaatgcaacatttcttgtagtg 9469462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 22590390 - 22590453
Alignment:
Q  259 aatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtga 322  Q
    |||||||||||  |||||||||||| ||||||| ||||||||||||||| ||||||||||||||    
T  22590390 aatttgccagggattcttgctcctggcattatttcctggcaatatgcaatatttcttgtagtga 22590453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 47413494 - 47413548
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  47413494 cttatttatttgcataagctatttttcataagctcaaaaataagccaatccaaac 47413548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 28690126 - 28690182
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  28690126 cttatttatttgcataagctatttttcataagctcaaaaacaagtcaatccaaacgg 28690182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 48819421 - 48819475
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||    
T  48819421 cttatttatttgcataagctatttttcataagctaaaaaataagccaatccaaac 48819475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 41196674 - 41196621
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||| |||||||||||||||| |||||||||||||  |||||||||||||    
T  41196674 cttatttatttgcataagctattttacataagctcaaaaataagccaatccaaa 41196621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 42367072 - 42367129
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||||||||||||||||||||| ||||  |||| ||||||||||||    
T  42367072 cttatttatttgcataagctatttttcataagcttaaaaataagcaaatccaaacggg 42367129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 1565338 - 1565284
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacg 384  Q
    |||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||    
T  1565338 cttatttatttgca-aagctatttttcataagctcaaaaataagccaatccaaacg 1565284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 391189 - 391132
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||||||| |||| ||||| |||||||  |||||||||||||||||    
T  391189 cttatttatttgcataagctgttttgcataacctcaaaaataagccaatccaaacggg 391132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 37329376 - 37329319
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||||| ||||||||||||||||||||  ||| | |||||||||||    
T  37329376 cttatttatttgcataagttatttttcataagctcaaaaataagtcgatccaaacggg 37329319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 37712190 - 37712243
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    ||||||| |||||||||||||||||| |||||||||||  ||| ||||||||||    
T  37712190 ttatttatttgcataagctatttttcgtaagctcaaaaataagtcaatccaaac 37712243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 4068238 - 4068294
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    ||||||| |||||||||||| ||||||||| || ||||  |||||||||||||||||    
T  4068238 ttatttatttgcataagctacttttcataaactaaaaaataagccaatccaaacggg 4068294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 9572748 - 9572712
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9572748 cttatttatttgcataagctatttttcataagctcaa 9572712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 28870325 - 28870381
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||| ||| ||||||||||||||| ||||  ||||||||||||||||    
T  28870325 cttatttatttgcaaaagttatttttcataagctaaaaattaagccaatccaaacgg 28870381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 19722177 - 19722260
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtg 321  Q
    ||||||||||| ||||||| ||||||||||||||     ||||||| ||||| ||||||||||   ||||| ||||||||||||    
T  19722177 tccctggcattactcctggtaaatttgccaggagcatcagctcctgacattaatccctggcaaatcgcaacttttcttgtagtg 19722260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 383
Target Start/End: Original strand, 26988273 - 26988324
Alignment:
Q  332 atttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    ||||| |||||||| |||||||||||||||||||||  ||| ||||||||||    
T  26988273 atttatttgcataaactatttttcataagctcaaaaataagtcaatccaaac 26988324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 385
Target Start/End: Complemental strand, 35897582 - 35897527
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    ||||||| || |||||||||||||||||||| ||||||  ||| ||||||||||||    
T  35897582 ttatttatttacataagctatttttcataagttcaaaaataagtcaatccaaacgg 35897527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 385
Target Start/End: Original strand, 45267593 - 45267640
Alignment:
Q  338 ttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    ||||||||||||||||||||||||||||||  || |||| ||||||||    
T  45267593 ttgcataagctatttttcataagctcaaaaataatccaacccaaacgg 45267640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 15235125 - 15235087
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  15235125 cttatttatttacataagctatttttcataagctcaaaa 15235087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 15515311 - 15515257
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| || | |||||||||||||||||||||| ||  ||||||||||||||    
T  15515311 cttatttatttacttaagctatttttcataagctcataaataagccaatccaaac 15515257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 17814312 - 17814350
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  17814312 cttatttatttacataagctatttttcataagctcaaaa 17814350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 19220295 - 19220333
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  19220295 cttatttatttgcataaactatttttcataagctcaaaa 19220333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 20169285 - 20169247
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  20169285 cttatttatttgcataagctgtttttcataagctcaaaa 20169247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 22776452 - 22776538
Alignment:
Q  233 gggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtag 319  Q
    |||| |||||||| || ||||||||||||||||||||||     ||||||| ||||||| | || ||| ||||||| ||||||||||    
T  22776452 gggcttccctggcgttactcctggcaaatttgccaggagcatcagctcctggcattatttcgtgacaaaatgcaacttttcttgtag 22776538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 5347276 - 5347313
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaa 366  Q
    |||||||| || ||||||||||||||||||||||||||    
T  5347276 cttatttatttacataagctatttttcataagctcaaa 5347313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 13039070 - 13039107
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaa 367  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  13039070 ttatttatttgcataagctatttttcataagttcaaaa 13039107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 15791505 - 15791542
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaa 366  Q
    |||||||| || ||||||||||||||||||||||||||    
T  15791505 cttatttatttacataagctatttttcataagctcaaa 15791542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 17628389 - 17628352
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaa 366  Q
    |||||||| || ||||||||||||||||||||||||||    
T  17628389 cttatttatttacataagctatttttcataagctcaaa 17628352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 4068136 - 4068080
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| ||||| |||||||||| || ||||| ||||  ||||||||||||||||    
T  4068136 cttatttatttgcacaagctattttgcaaaagctaaaaaataagccaatccaaacgg 4068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 32497235 - 32497199
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaa 366  Q
    ||||||| || ||||||||||||||||||||||||||    
T  32497235 ttatttatttacataagctatttttcataagctcaaa 32497199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 42363720 - 42363756
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  42363720 cttatttatttgcataagctctttttcataagctcaa 42363756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 42591504 - 42591540
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| || |||||||||||||||||||||||||    
T  42591504 cttatttatttacataagctatttttcataagctcaa 42591540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 53261731 - 53261678
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||    
T  53261731 cttatttaattgcataagctatttttcataagctcaaaactaagtcaatccaaa 53261678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 21530290 - 21530220
Alignment:
Q  252 cctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtga 322  Q
    ||||||||||||||||||||||  |||||||| ||| ||| |||||||| |||||  ||||||||||||||    
T  21530290 cctggcaaatttgccaggagttgatgctcctggcataatttcctggcaaaatgcaggatttcttgtagtga 21530220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 40240541 - 40240485
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  40240541 cttatttatttgcataagctatttttcataagctcaaaa-taagtcaatccaaacggg 40240485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 3876227 - 3876189
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  3876227 cttatttatttgcataagctatttttcataagctcaaaa 3876189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 43376817 - 43376853
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||||||||||||||| ||||||||||||||||    
T  43376817 cttatttagttgcataagctctttttcataagctcaa 43376853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 3645424 - 3645462
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  3645424 cttatttatttacataagctatttttcataagctcaaaa 3645462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 29614315 - 29614353
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| || |||||||||||||||||||||||||||    
T  29614315 cttatttatttacataagctatttttcataagctcaaaa 29614353  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 30321694 - 30321640
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| |||||||||||||||||| |||||| ||||  ||||||||| ||||    
T  30321694 cttatttatttgcataagctatttttcttaagctaaaaaataagccaatctaaac 30321640  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 365
Target Start/End: Complemental strand, 32901110 - 32901076
Alignment:
Q  331 tatttagttgcataagctatttttcataagctcaa 365  Q
    |||||| ||||||||||||||||||||||||||||    
T  32901110 tatttatttgcataagctatttttcataagctcaa 32901076  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 33946607 - 33946645
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaa 367  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  33946607 cttatttatttgcataagctattttgcataagctcaaaa 33946645  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 43971809 - 43971755
Alignment:
Q  331 tatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||| ||||||||| ||||||||||||||||||||  ||  ||||||||||||    
T  43971809 tatttatttgcataagttatttttcataagctcaaaataaactcaatccaaacgg 43971755  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 46573418 - 46573364
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaac 383  Q
    |||||||| |||||||||||||||||| |||||| ||||  |||| |||||||||    
T  46573418 cttatttatttgcataagctatttttcctaagctaaaaaataagcgaatccaaac 46573364  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 50540468 - 50540426
Alignment:
Q  340 gcataagctatttttcataagctcaaaacgaagccaatccaaa 382  Q
    ||||||||||||||||||||||||||||  ||| |||||||||    
T  50540468 gcataagctatttttcataagctcaaaaataagacaatccaaa 50540426  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 4257262 - 4257225
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaa 366  Q
    |||||||| || ||||||||||||||||||||||||||    
T  4257262 cttatttatttacataagctatttttcataagctcaaa 4257225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 17752094 - 17752057
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaa 367  Q
    ||||||| || |||||||||||||||||||||||||||    
T  17752094 ttatttatttacataagctatttttcataagctcaaaa 17752057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 19053414 - 19053377
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaa 367  Q
    ||||||| || |||||||||||||||||||||||||||    
T  19053414 ttatttatttacataagctatttttcataagctcaaaa 19053377  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 31787645 - 31787682
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaa 367  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  31787645 ttatttatttgcataaactatttttcataagctcaaaa 31787682  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 32983254 - 32983217
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaaa 367  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  32983254 ttatttatttgcataagctattttttataagctcaaaa 32983217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 365
Target Start/End: Complemental strand, 33946511 - 33946478
Alignment:
Q  332 atttagttgcataagctatttttcataagctcaa 365  Q
    ||||| ||||||||||||||||||||||||||||    
T  33946511 atttatttgcataagctatttttcataagctcaa 33946478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 43079898 - 43079841
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacggg 386  Q
    |||||||| ||| ||||||||||||||||||||||  ||  ||| |||||||||||||    
T  43079898 cttatttatttgaataagctatttttcataagctcgtaaataagtcaatccaaacggg 43079841  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 51884727 - 51884764
Alignment:
Q  265 ccaggagttcttgctcctgccattattccctggcaata 302  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  51884727 ccaggagttcttgctcctaacattattccctggcaata 51884764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 4974332 - 4974276
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| |||||||||||  ||| ||||||||| |||  ||||||||||||||||    
T  4974332 cttatttatttgcataagctgctttgcataagctctaaaataagccaatccaaacgg 4974276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 4974433 - 4974469
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  4974433 cttatttatttgcataagctctttttcataagctcaa 4974469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 38524210 - 38524246
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaa 365  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  38524210 cttatttatttgcataagctctttttcataagctcaa 38524246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 51409413 - 51409377
Alignment:
Q  330 ttatttagttgcataagctatttttcataagctcaaa 366  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  51409413 ttatttatttgcataagctattttccataagctcaaa 51409377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 321
Target Start/End: Original strand, 51885459 - 51885487
Alignment:
Q  293 cctggcaatatgcaacatttcttgtagtg 321  Q
    |||||||||||||||||||||||||||||    
T  51885459 cctggcaatatgcaacatttcttgtagtg 51885487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 24869 - 24925
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacgg 385  Q
    |||||||| |||||||||||| |||||||||||||||||  ||| ||||||||||||    
T  24869 cttatttatttgcataagctacttttcataagctcaaaaataagacaatccaaacgg 24925  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 58830 - 58777
Alignment:
Q  331 tatttagttgcataagctatttttcataagctcaaaacgaagccaatccaaacg 384  Q
    |||||| ||||||||||||||||| ||||| | ||||  |||||||||||||||    
T  58830 tatttatttgcataagctattttttataagtttaaaaataagccaatccaaacg 58777  T

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Target: scaffold1367 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 388
Target Start/End: Original strand, 1180 - 1239
Alignment:
Q  329 cttatttagttgcataagctatttttcataagctcaaaacgaagc-caatccaaacgggga 388  Q
    |||||||| ||||||||| ||||||||||||||| ||||  |||| |||||||||||||||    
T  1180 cttatttatttgcataagttatttttcataagcttaaaa-taagctcaatccaaacgggga 1239  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 60497 - 60581
Alignment:
Q  238 tccctggcattgctcctggcaaatttgccaggagttcttgctcctgccattattccctggcaatatgcaacatttcttgtagtga 322  Q
    ||||||||||| ||||| ||||||||||||||||     ||||||| ||||| ||||||| ||   ||||| |||||||||||||    
T  60497 tccctggcattactcctagcaaatttgccaggagcatcagctcctggcattaatccctggaaaatcgcaacttttcttgtagtga 60581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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