View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15825_high_8 (Length: 405)
Name: NF15825_high_8
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Complemental strand, 29433261 - 29432883
Alignment:
| Q |
15 |
atataaatgttttcctgtccatagaagatataataaatatttatacctcaattgccattttggcttcaccaaaataaacagtttcgccacgagcgagcaa |
114 |
Q |
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| T |
29433261 |
atataaatgttttcctgtccatagaagatataataaatatttatacctcaattgccattttggcttcaccaaaataaacagtttcgccacgagcgagcaa |
29433162 |
T |
|
| Q |
115 |
gaaaaggtcgtcaaaaagtgcaaatacttcactattgggctgatgaattgaagaaataacagtccttccatcatgagcaatatttctgagagtttgaaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29433161 |
gaaaaggtcgtcaaaaagtgcaaatacttcactattgggctgatgaattgaagaaataacagtccttccatcatgagcaatatttctgagagtttgaaca |
29433062 |
T |
|
| Q |
215 |
acaaaaaatgcagaagcactatctaagccacaagttggttcatcaagaaacaacaaacgaggctttgtgagaatctcaagtgcaatgctagttcttttcc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29433061 |
acaaaaaatgcagaagcactatctaagccacaagttggttcatcaagaaacaacaaacgaggctttgtgagaatctcaagtgcaatgctagttcttttcc |
29432962 |
T |
|
| Q |
315 |
tttcaccgccgcttaaacctctcagctgccagttacctattaacctatcctcaccgtcttagacacccatctcgatgat |
393 |
Q |
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| T |
29432961 |
tttcaccgccgcttatacctctcagatgccagttacctattaacctatctgcacagtcttggagacccatttctatgat |
29432883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 52 - 363
Target Start/End: Complemental strand, 29466055 - 29465744
Alignment:
| Q |
52 |
tatttatacctcaattgccattttggcttcaccaaaataaacagtttcgccacgagcgagcaagaaaaggtcgtcaaaaagtgcaaatacttcactattg |
151 |
Q |
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| T |
29466055 |
tatttatacctcgattgccattttagcttcaccaaaataaacagtttcaccaccagagagcaagaaaagatcatcaaaaagtgcaaagacttcactgcta |
29465956 |
T |
|
| Q |
152 |
ggctgatgaattgaagaaataacagtccttccatcatgagcaatatttctgagagtttgaacaacaaaaaatgcagaagcactatctaagccacaagttg |
251 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| |||||| |||||| |||||||| ||||||||||||||||||||||| || || |||| ||| | |
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| T |
29465955 |
ggctgatgaatagaagaaataacagtccttccatcacgagcaacatttctaagagtttggacaacaaaaaatgcagaagcactgtccaaaccactagtcg |
29465856 |
T |
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| Q |
252 |
gttcatcaagaaacaacaaacgaggctttgtgagaatctcaagtgcaatgctagttcttttcctttcaccgccgcttaaacctctcagctgccagttacc |
351 |
Q |
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||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| || || |||| |||||||| ||||||||||| |
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| T |
29465855 |
gttcatcaagaaacagcaaccgaggccttgtgagaatctcaagtgcaatgctagttcttttcctttcgccaccacttatacctctcaaatgccagttacc |
29465756 |
T |
|
| Q |
352 |
tattaacctatc |
363 |
Q |
| |
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|||||||||||| |
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| T |
29465755 |
tattaacctatc |
29465744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 336
Target Start/End: Complemental strand, 29480194 - 29479991
Alignment:
| Q |
133 |
tgcaaatacttcactattgggctgatgaattgaagaaataacagtccttccatcatgagcaatatttctgagagtttgaacaacaaaaaatgcagaagca |
232 |
Q |
| |
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|||||| || |||||| | || ||||||||||||||||||||||| | |||||||||||||| ||||| | ||||||| |||||||| |||| || ||| |
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| T |
29480194 |
tgcaaaaacctcactacttggttgatgaattgaagaaataacagttttcccatcatgagcaatgtttctcaaagtttgagcaacaaaatatgctgaggca |
29480095 |
T |
|
| Q |
233 |
ctatctaagccacaagttggttcatcaagaaacaacaaacgaggctttgtgagaatctcaagtgcaatgctagttcttttcctttcaccgccgcttaaac |
332 |
Q |
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| T |
29480094 |
ctgtccaaaccacttgttggctcatcaaggaacaagagacatggcctagtaagaatttcaagtgctatgctagttcttttcttttctccaccacttatac |
29479995 |
T |
|
| Q |
333 |
ctct |
336 |
Q |
| |
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|||| |
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|
| T |
29479994 |
ctct |
29479991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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