View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15825_low_11 (Length: 380)
Name: NF15825_low_11
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 43186367 - 43186018
Alignment:
| Q |
19 |
ggtgtatcctttaagattattttagtgtttatgatgaagaaaattatcagtttttatcatcattgttgttaaatagcagctgta--tagctcgtagcata |
116 |
Q |
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| T |
43186367 |
ggtgtatcctttaagattattttagtgtttatgatgaagaaaattatcagttgtaatcatcattgttgttaaatagcagctgtacatagctcgtagcata |
43186268 |
T |
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| Q |
117 |
gccaatttcaagcaaaccactcttctccgcgatctgcaatcgacaacagtggttatttttaaaccattcattttggcttaagttggatttaccaattgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186267 |
gccaatttcaagcaaaccactcttctccgcgatctgcaatcgacaacagtggttatttttaaaccattcattttggcttaagttggatttaccaattgaa |
43186168 |
T |
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| Q |
217 |
aaaaccaattgctaagatgttagtggttgttttagcttcataacatctgaagaaatgttgagttagcaaccattttccgctctgcgatgtaggttttcca |
316 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
43186167 |
aaaaccaattgctaagatgttagtggttgtttcagcttcataacatctgaagaaatgttgacttagcaaccattttccactctgcgatgtaggttttcca |
43186068 |
T |
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| Q |
317 |
gaggttagagnnnnnnngcaacaagtgccaggcttgtgctcttcacaggt |
366 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43186067 |
gaggttagaggttttttgcaacaagtgccaggcttgtgctcttcacaggt |
43186018 |
T |
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