View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15825_low_12 (Length: 376)

Name: NF15825_low_12
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15825_low_12
NF15825_low_12
[»] chr2 (3 HSPs)
chr2 (27-363)||(7435983-7436319)
chr2 (36-297)||(7524875-7525136)
chr2 (121-296)||(7519695-7519871)
[»] scaffold0129 (3 HSPs)
scaffold0129 (91-158)||(34446-34513)
scaffold0129 (91-162)||(18046-18117)
scaffold0129 (91-168)||(9541-9618)
[»] chr4 (4 HSPs)
chr4 (107-173)||(9603475-9603541)
chr4 (107-173)||(37894933-37894999)
chr4 (91-162)||(48742877-48742948)
chr4 (128-173)||(9573469-9573514)
[»] chr6 (7 HSPs)
chr6 (128-168)||(29144384-29144424)
chr6 (111-159)||(29123227-29123275)
chr6 (105-164)||(29153005-29153064)
chr6 (128-174)||(29130417-29130463)
chr6 (131-165)||(32973557-32973591)
chr6 (125-165)||(29299164-29299204)
chr6 (105-165)||(34281040-34281100)
[»] scaffold0134 (1 HSPs)
scaffold0134 (107-173)||(17170-17236)
[»] chr3 (1 HSPs)
chr3 (91-168)||(9704316-9704393)
[»] chr7 (1 HSPs)
chr7 (123-173)||(42445419-42445469)
[»] chr5 (2 HSPs)
chr5 (125-222)||(32642029-32642126)
chr5 (120-173)||(40548373-40548426)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 27 - 363
Target Start/End: Complemental strand, 7436319 - 7435983
Alignment:
Q  27 tggtctccgattgcaagacagacacatcgtcggagatggagaaatctgcgacgccgaccaccggaaaggttagcaatcacatacctgacgatgttgcatt 126  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||| |    
T  7436319 tggtctccaattgcaagacagacatatcgtcggagatggagaaatctgcgacgccggctaccggtaaggttagcaatcacatacctgatgatgttgcaat 7436220  T
Q  127 ttccattctatcaaaattgcctcttaaatctttgaagcgattcgaatctacatgtaattcatggtcaatgttatttcaaaacccttatttcatgaaaatc 226  Q
     |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7436219 ctccattctatcaaatttgcctcttaaatctttgaagcgatttgaatctacatgtaaatcatggtcaatgttatttcaaaacccttatttcatgaaaatc 7436120  T
Q  227 taccggaatcaaatcatacatggaaatcattctgatcatgccgatgcatctctcatcttacggcatactatcgtgtttgacaatgtagttaggcccgtgg 326  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7436119 taccggaatcgaatcatacaaggaaatcattctgatcatgctgatgcatctctcatcttacggcatactatcgtgttggacaatgtagttaggcccgtgg 7436020  T
Q  327 ttgaacctctcttccggtccaagatgcatttcatttc 363  Q
    ||||||| || |||| ||||| | || ||||||||||    
T  7436019 ttgaacccctattccagtccacgttgtatttcatttc 7435983  T

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Target: chr2; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 36 - 297
Target Start/End: Complemental strand, 7525136 - 7524875
Alignment:
Q  36 attgcaagacagacacatcgtcggagatggagaaatctgcgacgccgaccaccggaaaggttagcaatcacatacctgacgatgttgcattttccattct 135  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7525136 attgcaagacagacacatcatcggagatggagaaatctgcgacgccgacgaccggaaaggttagcaatcacatacctgacgatgttgcattttccattct 7525037  T
Q  136 atcaaaattgcctcttaaatctttgaagcgattcgaatctacatgtaattcatggtcaatgttatttcaaaacccttatttcatgaaaatctaccggaat 235  Q
    ||||||||||||||||||||||||| ||||||| ||||||  || |||  |||||||| |||||||||||||| |||||||||||||||| ||||| ||     
T  7525036 atcaaaattgcctcttaaatctttgcagcgatttgaatctgtatctaaaccatggtcattgttatttcaaaactcttatttcatgaaaatgtaccgcaac 7524937  T
Q  236 caaatcatacatggaaatcattctgatcatgccgatgcatctctcatcttacggcatactat 297  Q
    || |||||| |  ||||||||||||   |||  |||||||||||||| ||||||||||||||    
T  7524936 catatcatatacagaaatcattctggctatgatgatgcatctctcattttacggcatactat 7524875  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 121 - 296
Target Start/End: Original strand, 7519695 - 7519871
Alignment:
Q  121 tgcattttccattctatcaaaattgcctcttaaatctttgaagcgattcgaatctacatgtaattcatggtcaatgttatttcaaaacccttatttcatg 220  Q
    |||||| | ||||||||||||| ||||||| ||||||||||||| ||| |||  | ||||||| ||| |||||||||||||| ||||||  |||||||||    
T  7519695 tgcattcttcattctatcaaaactgcctctaaaatctttgaagctatttgaacttgcatgtaaatcacggtcaatgttatttgaaaaccactatttcatg 7519794  T
Q  221 aaaatctaccggaatcaaatcatacatggaaatcattctgatcatgccgatgcatctc-tcatcttacggcatacta 296  Q
    |   ||||| | ||||| ||||| ||||||||||||||| || | |  |||||||||| | ||||||||||||||||    
T  7519795 agcgtctactgcaatcatatcatgcatggaaatcattctcattaagatgatgcatctctttatcttacggcatacta 7519871  T

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Target: scaffold0129 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 34513 - 34446
Alignment:
Q  91 aaaggttagcaatcacatacctgacgatgttgcattttccattctatcaaaattgcctcttaaatctt 158  Q
    ||||||||||||||| || | ||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  34513 aaaggttagcaatcatattcatgatgatcttgcatttttcattctatcaaaattgcctcttaaatctt 34446  T

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Target: scaffold0129; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 18117 - 18046
Alignment:
Q  91 aaaggttagcaatcacatacctgacgatgttgcattttccattctatcaaaattgcctcttaaatctttgaa 162  Q
    ||||||||||||||| || | ||| ||| |||||||||||||||| || ||| |||||||||||||||||||    
T  18117 aaaggttagcaatcatattcatgatgatcttgcattttccattctgtccaaactgcctcttaaatctttgaa 18046  T

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Target: scaffold0129; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 9541 - 9618
Alignment:
Q  91 aaaggttagcaatcacatacctgacgatgttgcattttccattctatcaaaattgcctcttaaatctttgaagcgatt 168  Q
    |||||||||||||||||| |   | ||  |||||||||||||||| || ||||||||||||||||||||||| |||||    
T  9541 aaaggttagcaatcacatccacaatgacattgcattttccattctctccaaattgcctcttaaatctttgaaacgatt 9618  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 9603541 - 9603475
Alignment:
Q  107 atacctgacgatgttgcattttccattctatcaaaattgcctcttaaatctttgaagcgattcgaat 173  Q
    |||||||| ||| |||| || ||||||||||| |||||||||||||||||||| |||||||| ||||    
T  9603541 atacctgatgatattgccttctccattctatccaaattgcctcttaaatcttttaagcgatttgaat 9603475  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 37894933 - 37894999
Alignment:
Q  107 atacctgacgatgttgcattttccattctatcaaaattgcctcttaaatctttgaagcgattcgaat 173  Q
    |||||||| |||||||| || ||||||||||| ||| | ||||| ||||||||||||||||| ||||    
T  37894933 atacctgaagatgttgccttctccattctatccaaactccctctcaaatctttgaagcgatttgaat 37894999  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 48742948 - 48742877
Alignment:
Q  91 aaaggttagcaatcacatacctgacgatgttgcattttccattctatcaaaattgcctcttaaatctttgaa 162  Q
    ||||||||||||||| || ||||| ||| ||| |||||  ||| | || |||||||||||||||||||||||    
T  48742948 aaaggttagcaatcatattcctgatgatcttgaattttttattgtctccaaattgcctcttaaatctttgaa 48742877  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 9573469 - 9573514
Alignment:
Q  128 tccattctatcaaaattgcctcttaaatctttgaagcgattcgaat 173  Q
    ||||||||||| ||||||||| |||||||||| |||||||| ||||    
T  9573469 tccattctatccaaattgcctattaaatcttttaagcgatttgaat 9573514  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 29144384 - 29144424
Alignment:
Q  128 tccattctatcaaaattgcctcttaaatctttgaagcgatt 168  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  29144384 tccattctatcgaaattgcctcttaaatctttgaagcgatt 29144424  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 29123227 - 29123275
Alignment:
Q  111 ctgacgatgttgcattttccattctatcaaaattgcctcttaaatcttt 159  Q
    |||| ||| |||| || ||||||||||||||||||||||||||||||||    
T  29123227 ctgatgatattgccttctccattctatcaaaattgcctcttaaatcttt 29123275  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 29153064 - 29153005
Alignment:
Q  105 acatacctgacgatgttgcattttccattctatcaaaattgcctcttaaatctttgaagc 164  Q
    ||||| |||| ||| |||| || |||||||| ||||||||||||||||||||||| ||||    
T  29153064 acatatctgatgatattgccttctccattctctcaaaattgcctcttaaatctttcaagc 29153005  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 29130417 - 29130463
Alignment:
Q  128 tccattctatcaaaattgcctcttaaatctttgaagcgattcgaatc 174  Q
    |||||||| ||||| ||||||||||||||||| |||||||| |||||    
T  29130417 tccattctctcaaagttgcctcttaaatctttcaagcgatttgaatc 29130463  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 32973591 - 32973557
Alignment:
Q  131 attctatcaaaattgcctcttaaatctttgaagcg 165  Q
    ||||||||||||||||||||||||||||| |||||    
T  32973591 attctatcaaaattgcctcttaaatctttcaagcg 32973557  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 29299164 - 29299204
Alignment:
Q  125 ttttccattctatcaaaattgcctcttaaatctttgaagcg 165  Q
    ||||||||||| ||||| ||||||||||||||||| |||||    
T  29299164 ttttccattctctcaaagttgcctcttaaatcttttaagcg 29299204  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 34281040 - 34281100
Alignment:
Q  105 acatacctgacgatgttgcattttccattctatcaaaattgcctcttaaatctttgaagcg 165  Q
    ||||| |||| ||| |||| || || ||||| ||||||||||||||||||||||| |||||    
T  34281040 acatatctgatgatattgccttctctattctctcaaaattgcctcttaaatctttcaagcg 34281100  T

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Target: scaffold0134 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 17236 - 17170
Alignment:
Q  107 atacctgacgatgttgcattttccattctatcaaaattgcctcttaaatctttgaagcgattcgaat 173  Q
    |||||||||||| ||   || |||||||||||||| ||||||||||||||||||||| |||| ||||    
T  17236 atacctgacgatattagcttatccattctatcaaagttgcctcttaaatctttgaagagatttgaat 17170  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 9704316 - 9704393
Alignment:
Q  91 aaaggttagcaatcacatacctgacgatgttgcattttccattctatcaaaattgcctcttaaatctttgaagcgatt 168  Q
    ||||||||| ||  |||||| ||| ||  ||||||||||||||||||||||||| ||||| |||||||| || |||||    
T  9704316 aaaggttaggaactacatacatgatgaacttgcattttccattctatcaaaattacctctgaaatctttaaaacgatt 9704393  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 42445419 - 42445469
Alignment:
Q  123 cattttccattctatcaaaattgcctcttaaatctttgaagcgattcgaat 173  Q
    |||| |||||| |||||||||| |||||||||||||| |||||||| ||||    
T  42445419 cattctccattatatcaaaattacctcttaaatcttttaagcgatttgaat 42445469  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 32642029 - 32642126
Alignment:
Q  125 ttttccattctatcaaaattgcctcttaaatctttgaagcgattcgaatctacatgtaattcatggtcaatgttatttcaaaacccttatttcatgaa 222  Q
    ||||| |||||||||||||| ||||||||||||||| ||| ||| |||| |  | |||| ||||||||| | || ||| |||| |||  |||||||||    
T  32642029 ttttcaattctatcaaaattacctcttaaatctttgtagcaatttgaatatgtacgtaaatcatggtcatttttgtttgaaaatcctcttttcatgaa 32642126  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 40548373 - 40548426
Alignment:
Q  120 ttgcattttccattctatcaaaattgcctcttaaatctttgaagcgattcgaat 173  Q
    |||| ||||||||||||| |||| | ||| ||||||||||||||||||| ||||    
T  40548373 ttgccttttccattctataaaaacttcctgttaaatctttgaagcgatttgaat 40548426  T

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