View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15825_low_13 (Length: 371)
Name: NF15825_low_13
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 126 - 356
Target Start/End: Complemental strand, 31747371 - 31747137
Alignment:
| Q |
126 |
cctttcaactatggttattttaagaagttaaaccagaatacttaaattagcaccaggaaca-atcgaat--cagagattttgagaaagaatacatttcaa |
222 |
Q |
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| T |
31747371 |
cctttcaactatggttattttaagaagttaaaccagcatacttaaattagcactaggaacatagttaataccagagattttgagaaagaatatatttcaa |
31747272 |
T |
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| Q |
223 |
tgtcccaaat-aataccaccaaaccaatcaactatgttaaaagtgtttacgttgttgtttcaaagaagatgtgcacatataggattatagttaaaagcta |
321 |
Q |
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| T |
31747271 |
tgtcccaagttaataccaccaaaccaaccaactatgttaaaagtgtttaggttgttgtttcaaagatgatgtgcacatataggattatagttaaaagcta |
31747172 |
T |
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| Q |
322 |
tatttaggttctccctaaatcaaaacatttgatct |
356 |
Q |
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| T |
31747171 |
tatttaggtcctccctaaatcaaaacagttgatct |
31747137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 31747432 - 31747395
Alignment:
| Q |
65 |
atcaaaatgatcatttaaaccataaaacatgtagatag |
102 |
Q |
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| T |
31747432 |
atcaaaatgatcatttaaaccataaaacatgtagatag |
31747395 |
T |
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