View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15825_low_14 (Length: 303)

Name: NF15825_low_14
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15825_low_14
NF15825_low_14
[»] chr7 (5 HSPs)
chr7 (1-154)||(13416994-13417147)
chr7 (2-88)||(1986092-1986178)
chr7 (1-77)||(14076541-14076617)
chr7 (1-77)||(14386569-14386645)
chr7 (1-83)||(15572052-15572134)
[»] chr8 (1 HSPs)
chr8 (183-253)||(22773700-22773770)
[»] chr6 (5 HSPs)
chr6 (2-88)||(6921487-6921573)
chr6 (2-93)||(6948012-6948103)
chr6 (2-93)||(6943086-6943177)
chr6 (2-83)||(6954661-6954742)
chr6 (4-88)||(6935355-6935439)
[»] chr4 (1 HSPs)
chr4 (4-57)||(53774701-53774754)
[»] chr5 (1 HSPs)
chr5 (1-77)||(18964981-18965057)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 13417147 - 13416994
Alignment:
Q  1 attgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctacgtgatcgtccaa 100  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||| |||||    
T  13417147 attgaacaatttgtgattatctcggttgagttggggactgagacatatacacagttgttgctacctcgatgttgtgaggaagagctacgcgatcctccaa 13417048  T
Q  101 gacttcatccagctctttctatgttgaatggttgtctttgtttttcttatgatt 154  Q
     ||||| |||  |||||||||||||||||| |||||||||||||||||||||||    
T  13417047 tacttcctcctactctttctatgttgaatgattgtctttgtttttcttatgatt 13416994  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 1986178 - 1986092
Alignment:
Q  2 ttgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctac 88  Q
    |||||||| |||| |||||||| ||||  |||||||| |||| |||||| ||||||||||| ||||||| |||||| ||||||||||    
T  1986178 ttgaacaacttgtaattatctcacttgatttggggacagagagatatacacagttgttgctccctcgatattgtgatgaagatctac 1986092  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14076541 - 14076617
Alignment:
Q  1 attgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtga 77  Q
    ||||| ||||||||||||||||| ||||  |||||||||||||||||||| || ||||| || |||| |||||||||    
T  14076541 attgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtga 14076617  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14386569 - 14386645
Alignment:
Q  1 attgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtga 77  Q
    ||||| ||||||||||||||||| ||||  |||||||||||||||||||| || ||||| || |||| |||||||||    
T  14386569 attgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtga 14386645  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 15572134 - 15572052
Alignment:
Q  1 attgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaaga 83  Q
    ||||||||||||||||| ||||||||||  |||||||| || |||||||  || | | ||||||||||||||||||| |||||    
T  15572134 attgaacaatttgtgataatctcgcttgatttggggacagaaacatatagacaatcgatgctacctcgatgttgtgatgaaga 15572052  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 22773700 - 22773770
Alignment:
Q  183 agttcgtctatttttcagttatataacaaagccccagttacaatgggctctttctttagtgaaaggctcca 253  Q
    |||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||    
T  22773700 agttcgtctatttttcagttatataacaaagccccagttatagcgggctctttctttagtgaaaggctcca 22773770  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 6921573 - 6921487
Alignment:
Q  2 ttgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctac 88  Q
    |||||||||||||||| ||||| ||||  |||||||| ||||||||||| || |||||||| |||||||||||||| ||||| ||||    
T  6921573 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctac 6921487  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 6948103 - 6948012
Alignment:
Q  2 ttgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctacgtgat 93  Q
    |||||||| ||||||| ||||| ||||  |||||||| |||| |||||| | ||||||||| |||||||||||||| ||||| |||| ||||    
T  6948103 ttgaacaacttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatgaagagctacatgat 6948012  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 6943177 - 6943086
Alignment:
Q  2 ttgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctacgtgat 93  Q
    |||||||||| ||||| ||||| ||||  |||||||| |||||||||||  | |||||||| |||| ||||||||| ||||| |||| ||||    
T  6943177 ttgaacaattcgtgatgatctcacttgatttggggacagagacatatacaaaattgttgctccctcaatgttgtgatgaagagctacatgat 6943086  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 6954742 - 6954661
Alignment:
Q  2 ttgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaaga 83  Q
    ||||| |||||||||| ||||| ||||   || |||| ||||||||||| ||||||||||| || ||||||||||| |||||    
T  6954742 ttgaaaaatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatgaaga 6954661  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 6935439 - 6935355
Alignment:
Q  4 gaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctac 88  Q
    |||||||| ||||| ||||| ||||  |||||||| ||||||| |||  | |||||||| |||||||||||||| ||||| ||||    
T  6935439 gaacaattcgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcgatgttgtgatgaagagctac 6935355  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 53774701 - 53774754
Alignment:
Q  4 gaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttg 57  Q
    ||||||||||||||||| |||||||  |||| ||| ||||||||||| ||||||    
T  53774701 gaacaatttgtgattatttcgcttgatttggagacagagacatatacacagttg 53774754  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18965057 - 18964981
Alignment:
Q  1 attgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtga 77  Q
    ||||| ||||||||||||||||| ||||   ||||||  ||||||| ||| |||||||| || |||| |||||||||    
T  18965057 attgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtga 18964981  T

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