View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15825_low_15 (Length: 301)

Name: NF15825_low_15
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15825_low_15
NF15825_low_15
[»] scaffold0802 (2 HSPs)
scaffold0802 (1-171)||(1300-1473)
scaffold0802 (1-47)||(1123-1168)
[»] chr6 (16 HSPs)
chr6 (1-106)||(18242036-18242143)
chr6 (1-106)||(3403869-3403976)
chr6 (1-106)||(30388244-30388351)
chr6 (1-102)||(2762554-2762657)
chr6 (1-72)||(10039847-10039918)
chr6 (1-72)||(11656583-11656654)
chr6 (1-105)||(13579532-13579638)
chr6 (1-57)||(33972193-33972249)
chr6 (4-47)||(31598157-31598200)
chr6 (4-47)||(31598641-31598684)
chr6 (1-47)||(12714436-12714481)
chr6 (1-55)||(21032097-21032151)
chr6 (1-55)||(33658560-33658614)
chr6 (1-47)||(18241859-18241904)
chr6 (1-55)||(23250774-23250827)
chr6 (2-47)||(21032285-21032329)
[»] chr1 (9 HSPs)
chr1 (179-289)||(38821269-38821380)
chr1 (1-158)||(17518484-17518642)
chr1 (1-171)||(41082910-41083082)
chr1 (1-171)||(47955307-47955480)
chr1 (4-104)||(8108905-8109007)
chr1 (1-105)||(22149582-22149687)
chr1 (1-106)||(31847961-31848067)
chr1 (115-169)||(1176839-1176893)
chr1 (1-55)||(46057013-46057067)
[»] chr8 (23 HSPs)
chr8 (1-171)||(15156065-15156238)
chr8 (1-106)||(37752181-37752288)
chr8 (1-171)||(12281125-12281298)
chr8 (1-171)||(43245872-43246045)
chr8 (4-171)||(41662286-41662456)
chr8 (1-170)||(765736-765908)
chr8 (1-93)||(16929022-16929113)
chr8 (1-92)||(43162417-43162508)
chr8 (1-105)||(74865-74971)
chr8 (1-90)||(18019872-18019961)
chr8 (1-93)||(34313944-34314036)
chr8 (1-104)||(7127831-7127936)
chr8 (1-72)||(9465675-9465746)
chr8 (1-88)||(37670135-37670222)
chr8 (1-71)||(33748164-33748236)
chr8 (1-55)||(22786930-22786984)
chr8 (8-73)||(43597892-43597957)
chr8 (1-47)||(12281430-12281475)
chr8 (4-55)||(11007651-11007702)
chr8 (1-47)||(15155888-15155933)
chr8 (1-47)||(37752420-37752465)
chr8 (115-171)||(12281423-12281479)
chr8 (131-171)||(23123339-23123379)
[»] scaffold0319 (1 HSPs)
scaffold0319 (1-106)||(6577-6684)
[»] chr5 (17 HSPs)
chr5 (1-106)||(18433082-18433189)
chr5 (1-106)||(26020517-26020624)
chr5 (1-106)||(25115824-25115931)
chr5 (1-106)||(25174916-25175023)
chr5 (1-106)||(34576932-34577039)
chr5 (3-104)||(5187591-5187694)
chr5 (34-104)||(22429138-22429210)
chr5 (1-93)||(9665608-9665700)
chr5 (1-103)||(5779742-5779846)
chr5 (3-56)||(12441196-12441249)
chr5 (1-47)||(5187834-5187879)
chr5 (120-171)||(5187832-5187883)
chr5 (1-47)||(18433320-18433365)
chr5 (1-55)||(23011261-23011315)
chr5 (1-47)||(25116065-25116110)
chr5 (1-47)||(25175155-25175200)
chr5 (1-54)||(9869742-9869795)
[»] chr2 (13 HSPs)
chr2 (1-93)||(6171337-6171429)
chr2 (1-171)||(30190924-30191097)
chr2 (1-106)||(11883690-11883797)
chr2 (1-106)||(32673023-32673130)
chr2 (1-106)||(40469609-40469716)
chr2 (1-171)||(20347344-20347517)
chr2 (1-93)||(26737660-26737753)
chr2 (4-102)||(17345802-17345902)
chr2 (4-77)||(15920918-15920991)
chr2 (1-72)||(40221492-40221563)
chr2 (1-55)||(43495488-43495541)
chr2 (1-47)||(32672847-32672892)
chr2 (115-171)||(17346032-17346087)
[»] chr7 (16 HSPs)
chr7 (4-171)||(3687540-3687709)
chr7 (1-171)||(9412205-9412378)
chr7 (1-104)||(6908394-6908498)
chr7 (1-104)||(5349642-5349747)
chr7 (1-87)||(13772795-13772881)
chr7 (1-87)||(15567169-15567255)
chr7 (1-104)||(35080132-35080237)
chr7 (1-87)||(33628466-33628552)
chr7 (21-106)||(34235879-34235966)
chr7 (120-171)||(30857906-30857957)
chr7 (1-47)||(9412028-9412073)
chr7 (60-105)||(29291982-29292029)
chr7 (1-47)||(18925233-18925279)
chr7 (1-47)||(27096170-27096216)
chr7 (1-47)||(27182087-27182133)
chr7 (115-171)||(9412024-9412080)
[»] chr3 (16 HSPs)
chr3 (1-171)||(10293609-10293781)
chr3 (1-171)||(20968900-20969072)
chr3 (1-105)||(18874957-18875063)
chr3 (1-159)||(9026748-9026906)
chr3 (1-72)||(3644724-3644795)
chr3 (1-56)||(1101094-1101148)
chr3 (1-56)||(4947377-4947432)
chr3 (1-56)||(45060776-45060830)
chr3 (1-55)||(13657625-13657679)
chr3 (1-47)||(3644787-3644832)
chr3 (1-47)||(10293913-10293958)
chr3 (1-55)||(17372477-17372531)
chr3 (118-171)||(47665912-47665965)
chr3 (1-52)||(14015874-14015926)
chr3 (3-55)||(17440877-17440929)
chr3 (1-49)||(18874885-18874932)
[»] scaffold0192 (1 HSPs)
scaffold0192 (1-106)||(25249-25356)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-106)||(45687-45794)
[»] chr4 (21 HSPs)
chr4 (1-93)||(11241570-11241662)
chr4 (1-106)||(16555697-16555804)
chr4 (1-105)||(3930360-3930466)
chr4 (1-106)||(13198671-13198778)
chr4 (1-104)||(5206139-5206244)
chr4 (1-93)||(22681662-22681753)
chr4 (1-93)||(35393558-35393650)
chr4 (1-88)||(27304897-27304984)
chr4 (1-81)||(8488278-8488358)
chr4 (1-55)||(49178636-49178690)
chr4 (3-60)||(24775633-24775690)
chr4 (1-47)||(16555520-16555565)
chr4 (1-47)||(5206234-5206278)
chr4 (120-171)||(22681881-22681932)
chr4 (120-171)||(24775785-24775836)
chr4 (1-47)||(8181996-8182042)
chr4 (1-47)||(11241394-11241439)
chr4 (1-47)||(13198910-13198955)
chr4 (1-47)||(16555821-16555866)
chr4 (115-171)||(16555516-16555572)
chr4 (131-171)||(23433498-23433538)
[»] scaffold0002 (1 HSPs)
scaffold0002 (6-149)||(411945-412090)
[»] scaffold1221 (1 HSPs)
scaffold1221 (1-93)||(1563-1655)
[»] scaffold0598 (1 HSPs)
scaffold0598 (1-93)||(6755-6847)
[»] scaffold0001 (3 HSPs)
scaffold0001 (1-72)||(439001-439072)
scaffold0001 (1-55)||(183544-183598)
scaffold0001 (1-47)||(439203-439248)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-106)||(16920-17027)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-52)||(73086-73137)


Alignment Details
Target: scaffold0802 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 1300 - 1473
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  1300 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 1399  T
Q  99 aatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||||         |||| ||||||| || ||||||||| ||||||||| | ||||||||| |||||||||    
T  1400 aatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagatagggggaaaaagtgcaattaagc 1473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1168 - 1123
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  1168 tgcaaaatcgcacaattaac-aaaagatagggggaaaaagtgcaatt 1123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 18242036 - 18242143
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  18242036 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 18242135  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  18242136 aatcgctc 18242143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 3403869 - 3403976
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  3403869 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 3403968  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  3403969 aatcgctc 3403976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 30388244 - 30388351
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||  |||||||    
T  30388244 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggtaaaaagatggggtgcaa 30388343  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  30388344 aatcgctc 30388351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2762657 - 2762554
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  2762657 tgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcaaaaagggggcaaaaagatgaggtgcaa 2762558  T
Q  99 aatc 102  Q
    ||||    
T  2762557 aatc 2762554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 10039847 - 10039918
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 72  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10039847 tgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 10039918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 11656654 - 11656583
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 72  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  11656654 tgcaaaatcgcacaattatcaaaacgatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 11656583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 13579532 - 13579638
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||| ||| ||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||  |||||||    
T  13579532 tgcagaattgcacaattagcaaaaatatagggggcaaaagtgcaattgaacacaaatatggggtgcaaaataagaaaggggccaaaaaaatggggtgcaa 13579631  T
Q  99 aatcgct 105  Q
    |||||||    
T  13579632 aatcgct 13579638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33972193 - 33972249
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaag 57  Q
    ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  33972193 tgcaaaatctcacaattagcaaaaagatatggggcaaaagtgcaattgaacacaaag 33972249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 31598157 - 31598200
Alignment:
Q  4 aaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||| ||||||||||| |||||||||||||||||    
T  31598157 aaaatcgcacaattgacaaaaagatagggggcaaaagtgcaatt 31598200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 31598641 - 31598684
Alignment:
Q  4 aaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||| ||||||||||| |||||||||||||||||    
T  31598641 aaaatcgcacaattgacaaaaagatagggggcaaaagtgcaatt 31598684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12714481 - 12714436
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  12714481 tgcaaaatcgcacaattaac-aaaagatagggggcaaaagtgcaatt 12714436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21032151 - 21032097
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||| | |||||||    
T  21032151 tgcaaaatcgcacaattgacaagaagatagggggcaaaagtgcaactaaacacaa 21032097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33658614 - 33658560
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||||| |||||||    
T  33658614 tgcaaaattgcacaattggcaaaaagataaagggcaaaagtgcaattaaacacaa 33658560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18241904 - 18241859
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  18241904 tgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 18241859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23250774 - 23250827
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    |||||||||||||||||||| |||| || ||||| |||||||||||| |||||||    
T  23250774 tgcaaaatcgcacaattaaccaaaatat-aggggtaaaagtgcaattaaacacaa 23250827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 21032285 - 21032329
Alignment:
Q  2 gcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||    
T  21032285 gcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 21032329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 38821269 - 38821380
Alignment:
Q  179 taattaaacactt-agttggattactgaaattaaatgtcttgatcaaatactgaacagatattgcaacatcttctcttggttaccgggtggttattaggt 277  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821269 taattaaacactttagttggattactgaaattaaatctcttgatcaaatattgaacagatattgcaacatcttctcttggttaccgggtggttattaggt 38821368  T
Q  278 attagtatgatg 289  Q
    ||||||||||||    
T  38821369 attagtatgatg 38821380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 17518484 - 17518642
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat-ggtgcaaa 99  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17518484 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgggtgcaaa 17518583  T
Q  100 atcgctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaa 158  Q
    || ||||        |||| ||||||| || ||||||||| ||||||||| | ||||||    
T  17518584 attgctcaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagatagggggaaaa 17518642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 41083082 - 41082910
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    ||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  41083082 tgcaaaatcgcacaattagtaaaaagataaggggcaaaagtacaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 41082983  T
Q  99 aatcgctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    |||||||         |||| | ||||| || ||||||||| ||||||||| | ||||||||| |||||||||    
T  41082982 aatcgctaaaaaaaaagaggggatgcaaaatcgcacaattggcaaaagatagggggaaaaagtacaattaagc 41082910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 47955480 - 47955307
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  47955480 tgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 47955381  T
Q  99 aatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||||         |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  47955380 aatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 47955307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 8108905 - 8109007
Alignment:
Q  4 aaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaat 101  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  8108905 aaaatcgcacaattagcaaaaagatatggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcaaaaagggggcaaaaagatggggtgcaaaat 8109004  T
Q  102 cgc 104  Q
    |||    
T  8109005 cgc 8109007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 22149582 - 22149687
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  |||||||    
T  22149582 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattaaacacaaagatggggtgcaaaatcagaaa-ggggcaaaaagatggggtgcaa 22149680  T
Q  99 aatcgct 105  Q
    |||||||    
T  22149681 aatcgct 22149687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 31848067 - 31847961
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgca--aaatcagaaagggggcaaaaagat--ggtgc 96  Q
    |||||||||||||||||  ||||||||||  |||||||||||||||| |||||||  |   ||| ||  ||| ||||||||||||||||||||  |||||    
T  31848067 tgcaaaatcgcacaattggcaaaaagatagagggcaaaagtgcaattaaacacaagaa---ggtccatcaaaccagaaagggggcaaaaagatcgggtgc 31847971  T
Q  97 aaaatcgctc 106  Q
    ||||||||||    
T  31847970 aaaatcgctc 31847961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 1176893 - 1176839
Alignment:
Q  115 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaa 169  Q
    |||| ||||||| |||||||||||||||||||||| | || |||||| |||||||    
T  1176893 gagggggtgcaaaattgcacaattgacaaaagatagggggtaaaagtgcaattaa 1176839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46057067 - 46057013
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    |||||||||||||||||  |||||| ||| ||||||||| ||||||| |||||||    
T  46057067 tgcaaaatcgcacaattggcaaaaaaatagggggcaaaattgcaattaaacacaa 46057013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 15156065 - 15156238
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  15156065 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 15156164  T
Q  99 aatcgct-cnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    |||||||          |||| ||||||| || ||||||||||||||||||| | || |||||| |||||||||    
T  15156165 aatcgctaaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggggggaaaagtgcaattaagc 15156238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 37752288 - 37752181
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  37752288 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 37752189  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  37752188 aatcgctc 37752181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 12281298 - 12281125
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  12281298 tgcaaaatcgcacagttagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatctgaaagggggcaaaaagatggggtgcaa 12281199  T
Q  99 aatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||||         |||||||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  12281198 aatcgctcaaaaaaaaagaggaggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 12281125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 43246045 - 43245872
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  43246045 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgtaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 43245946  T
Q  99 aatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||||         |||| ||||||| || ||||||||  ||||||||| | ||||||||| |||||||||    
T  43245945 aatcgctcaataaaaaagagggggtgcaaaatcgcacaattatcaaaagatagggggaaaaagtgcaattaagc 43245872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 41662286 - 41662456
Alignment:
Q  4 aaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaat 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||||||    
T  41662286 aaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagataaggtgcaaaatcagaaagggggcaaaaagatggggtgcaaaat 41662385  T
Q  102 cgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    |||||         |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  41662386 cgctcaataaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 41662456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 765908 - 765736
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  765908 tgcaaaatcgcacggttagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatctgaaagggggcaaaaagatggggtgcaa 765809  T
Q  99 aatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaag 170  Q
    ||||||||         |||| ||||||| || ||||||||| ||||||||| | || |||||| ||||||||    
T  765808 aatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaag 765736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 16929113 - 16929022
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 93  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16929113 tgcaaaatctcacaattaacaaaaagataaggggcaaaagtgcaatt-aacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 16929022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 43162417 - 43162508
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatg 92  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43162417 tgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaaggggacaaaaagatg 43162508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 74865 - 74971
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  74865 tgcaaaatcgcacaattgacaaaaagataggggacaaaagtgcaattaaacacaaagatgtggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 74964  T
Q  99 aatcgct 105  Q
    |||||||    
T  74965 aatcgct 74971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 18019961 - 18019872
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaaga 90  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18019961 tgcaaaatcgcacaattaggaaaaagatagggggcaaaagtgcaattgaacacaaagatgcggtgcaaaatcagaaagggggcaaaaaga 18019872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34313944 - 34314036
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 93  Q
    |||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  34313944 tgcaaaatcgtacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaaaggggcaaaaagatgg 34314036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 7127831 - 7127936
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    ||||||||| | |||||| |||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||  |||||||    
T  7127831 tgcaaaatcacgcaattagcaaaaagatagggggtaaaagtgcaattgaacacaaaaatgggatgcaaaatcagaaaaggggtaaaaagatagggtgcaa 7127930  T
Q  99 aatcgc 104  Q
    ||||||    
T  7127931 aatcgc 7127936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 9465746 - 9465675
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 72  Q
    |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  9465746 tgcaaaatcgcacagttagcaaaaagatagggggcaaaagtgcaattgaacacaaagatagggtgcaaaatc 9465675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 37670135 - 37670222
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 88  Q
    ||||||||| |||||||| |||||| ||| ||  ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||    
T  37670135 tgcaaaatcacacaattagcaaaaaaatatggtacaaaaatgcaattaaacacaaagatggggtgctaaatcagaaagggggcaaaaa 37670222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 33748164 - 33748236
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaaga--taaggggcaaaagtgcaattgaacacaaagatggggtgcaaaat 71  Q
    |||||||||||||||||| |||||| |  || |||||||||||||||||||||||||||||| ||||||||||    
T  33748164 tgcaaaatcgcacaattagcaaaaaaaaatagggggcaaaagtgcaattgaacacaaagatgaggtgcaaaat 33748236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22786984 - 22786930
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||    
T  22786984 tgcaaaatcgcacaactgacaaatagataaggggcaaaagtgcaattaaacacaa 22786930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 43597957 - 43597892
Alignment:
Q  8 tcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatca 73  Q
    ||||||||||| |||||||||| ||||||||||  ||||||||||||||| || | ||||||||||    
T  43597957 tcgcacaattagcaaaaagatagggggcaaaagcacaattgaacacaaagttgagatgcaaaatca 43597892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12281430 - 12281475
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  12281430 tgcaaaatcgcacaattaac-aaaagataagggggaaaagtgcaatt 12281475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 11007702 - 11007651
Alignment:
Q  4 aaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    ||||||||||||||  |||||||||| || |||||||||||||| |||||||    
T  11007702 aaaatcgcacaattggcaaaaagatagggagcaaaagtgcaattaaacacaa 11007651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15155933 - 15155888
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  15155933 tgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 15155888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37752420 - 37752465
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  37752420 tgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 37752465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 12281423 - 12281479
Alignment:
Q  115 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  12281423 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 12281479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 23123379 - 23123339
Alignment:
Q  131 gcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||||||||||||||| |||| |||||| |||||||||    
T  23123379 gcacaattgacaaaagataggagggaaaagtgcaattaagc 23123339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 6577 - 6684
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  6577 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 6676  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  6677 aatcgctc 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 18433189 - 18433082
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  18433189 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 18433090  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  18433089 aatcgctc 18433082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 26020624 - 26020517
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  26020624 tgcaaaatcgcacaattaacaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgcggtgcaa 26020525  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  26020524 aatcgctc 26020517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 25115931 - 25115824
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  25115931 tgcaaaatcgcacaattagcaaaatgataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 25115832  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  25115831 aatcgctc 25115824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 25175023 - 25174916
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  25175023 tgcaaaatcgcacaattagcaaaatgataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 25174924  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  25174923 aatcgctc 25174916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 34577039 - 34576932
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  34577039 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattaaacacaaagatggggtggaaaatcagaaagggggcaaaaagatggggtgcaa 34576940  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  34576939 aatcgctc 34576932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 5187694 - 5187591
Alignment:
Q  3 caaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaa 100  Q
    |||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||    
T  5187694 caaaatcgcataattagcaaaaagataggggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaaggggacaaaaagatggggtgcaaaa 5187595  T
Q  101 tcgc 104  Q
    ||||    
T  5187594 tcgc 5187591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 22429138 - 22429210
Alignment:
Q  34 gcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaatcgc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  22429138 gcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaaaatcgc 22429210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 9665700 - 9665608
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 93  Q
    |||| ||||||||||||| |||||||||| |||||||||   |||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  9665700 tgcagaatcgcacaattagcaaaaagatagggggcaaaaacacaattgaacacaaagatgaggtgcaaaatcagaaagggagcaaaaagatgg 9665608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 5779742 - 5779846
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg--tgcaa 98  Q
    |||||||||||||||||| |||||||||| | | |||||||||||||||||||||| ||| | ||||||||||||||| ||  ||||||||||  |||||    
T  5779742 tgcaaaatcgcacaattagcaaaaagataggagacaaaagtgcaattgaacacaaaaatgagatgcaaaatcagaaagaggaaaaaaagatggaatgcaa 5779841  T
Q  99 aatcg 103  Q
    |||||    
T  5779842 aatcg 5779846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 12441196 - 12441249
Alignment:
Q  3 caaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaa 56  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  12441196 caaaatcgcacaattgacaaaaagatagggggcaaaagtgcaattaaacacaaa 12441249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5187834 - 5187879
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||    
T  5187834 tgcaaaattgcacaattaacaaaa-gataaggggcaaaagtgcaatt 5187879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 5187832 - 5187883
Alignment:
Q  120 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||| ||||||||||| |||||||||||| || |||||| |||||||||    
T  5187832 ggtgcaaaattgcacaattaacaaaagataaggggcaaaagtgcaattaagc 5187883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18433320 - 18433365
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  18433320 tgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 18433365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23011261 - 23011315
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    |||||||||||||||||  | |||||||| ||||||||| ||||||| |||||||    
T  23011261 tgcaaaatcgcacaattggctaaaagatagggggcaaaattgcaattaaacacaa 23011315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25116065 - 25116110
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  25116065 tgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 25116110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25175155 - 25175200
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  25175155 tgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 25175200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9869742 - 9869795
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacaca 54  Q
    |||||||||||||||||   ||||||| | ||||||||||||||||| ||||||    
T  9869742 tgcaaaatcgcacaattggtaaaaagacagggggcaaaagtgcaattaaacaca 9869795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 6171337 - 6171429
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6171337 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 6171429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 30191097 - 30190924
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  30191097 tgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 30190998  T
Q  99 aatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||||         |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  30190997 aatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 30190924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 11883797 - 11883690
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  11883797 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcataaagggggcaaaaagatgaggtgcaa 11883698  T
Q  99 aatcgctc 106  Q
    ||| ||||    
T  11883697 aattgctc 11883690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 32673023 - 32673130
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||  |||||||    
T  32673023 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagagggcgaaaagatggggtgcaa 32673122  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  32673123 aatcgctc 32673130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 40469609 - 40469716
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  40469609 tgcaaaatcgcacaattagcaaaacgataagggggaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 40469708  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  40469709 aatcgctc 40469716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 20347344 - 20347517
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||    
T  20347344 tgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaaggggacaaaaagatggggtgcaa 20347443  T
Q  99 aatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    |||| |||         |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  20347444 aatccctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 20347517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26737660 - 26737753
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt-gaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 93  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  26737660 tgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaatttgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatgg 26737753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 17345902 - 17345802
Alignment:
Q  4 aaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaat 101  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||  ||||||||||    
T  17345902 aaaatcgcacaattaacaaaaatatagggggcaaaagtgcaattgaacacaaagatggagtgcaaaatcaaaagggggccaaaaagatagggtgcaaaat 17345803  T
Q  102 c 102  Q
    |    
T  17345802 c 17345802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 15920918 - 15920991
Alignment:
Q  4 aaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaa 77  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  15920918 aaaatcgcacaattagcaaaaagttagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaa 15920991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40221492 - 40221563
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 72  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  40221492 tgcaaaatcgcacaattagcaaaaagatagggggcaaaagcgcaattgaacacaaagatggggtgcaaaatc 40221563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43495488 - 43495541
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||    
T  43495488 tgcaaaatcgcacaattgacaaaaagat-agggggaaaagtgcaattaaacacaa 43495541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32672892 - 32672847
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||    
T  32672892 tgcaaaatcgcacaattaac-aaaagataaggaacaaaagtgcaatt 32672847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 17346032 - 17346087
Alignment:
Q  115 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    |||||||||||| || ||||||||  |||||||||| |||||||||| |||||||||    
T  17346032 gaggaggtgcaaaatcgcacaattagcaaaagataa-aggaaaaagtgcaattaagc 17346087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 3687540 - 3687709
Alignment:
Q  4 aaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaat 101  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  3687540 aaaatcgcacaattagcaaaaaaataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaaaat 3687639  T
Q  102 cgctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    |||||        |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  3687640 cgctcaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 3687709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 9412205 - 9412378
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  9412205 tgcaaaatcgcacagttagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatctgaaagggggcaaaaagatggggtgcaa 9412304  T
Q  99 aatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||||         |||| ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  9412305 aatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 9412378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 6908394 - 6908498
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat-ggtgcaaa 99  Q
    |||||||||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  6908394 tgcaaaatcgcacaattagcaaaaagatagggggtaaaagcgcaattgaacacaaagatggggtgcaaaatcagaaaggaggcaaaaagatgggtgcaaa 6908493  T
Q  100 atcgc 104  Q
    |||||    
T  6908494 atcgc 6908498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5349642 - 5349747
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||| |||||||   |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  5349642 tgcaaaattgcacaatatgcaaaaagatagggggcaaaagtgcaattgaatacaaagatggggtgcaaaatcagaaagggggtaaaaagatggggtgcaa 5349741  T
Q  99 aatcgc 104  Q
    ||||||    
T  5349742 aatcgc 5349747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13772795 - 13772881
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 87  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||    
T  13772795 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgtaattgaacacaaagatggggtgaaaaattagaaagggtgcaaaa 13772881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 15567169 - 15567255
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 87  Q
    ||||||||| |||||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15567169 tgcaaaatcacacaattagcaaaaagagagggggcaaacgtgcaattgaacacaaagatggggtgcaaaatcagaaagggtgcaaaa 15567255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35080132 - 35080237
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |  ||||||| ||||||||||  |||||||||||||||||| |||||||||||||||||| |||||||||||  |||||||    
T  35080132 tgcaaaatcgcacaattagcttaaagatagggggcaaaagcacaattgaacacaaagatgaggtgcaaaatcagaaaggaggcaaaaagatggggtgcaa 35080231  T
Q  99 aatcgc 104  Q
    ||||||    
T  35080232 aatcgc 35080237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33628552 - 33628466
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 87  Q
    |||||||| ||||||||| |||||||||| || ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  33628552 tgcaaaattgcacaattagcaaaaagatagggtgcaaatgtgcaattgaacacaaggatggggtgcaaaatcagaaagggtgcaaaa 33628466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 34235879 - 34235966
Alignment:
Q  21 aaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatg--gtgcaaaatcgctc 106  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| |  ||||||||||||||    
T  34235879 aaaaagatagggggcaaaagtgcaattaaacacaaagatggggtgcagaatcagaaatggggcaaaaagacggcgtgcaaaatcgctc 34235966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 30857906 - 30857957
Alignment:
Q  120 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  30857906 ggtgcaaaattgcacaattgacaaaagataagagacaaaagtgcaattaagc 30857957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9412073 - 9412028
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  9412073 tgcaaaatcgcacaattaac-aaaagataagggggaaaagtgcaatt 9412028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 29291982 - 29292029
Alignment:
Q  60 ggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaatcgct 105  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||    
T  29291982 ggggtgcaaaatcagaaatggggcaaaaagatagggtgcaaaatcgct 29292029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18925233 - 18925279
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||  |||||||||| ||||||||||| |||||    
T  18925233 tgcaaaatcgcacaattggcaaaaagatagggggcaaaagttcaatt 18925279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27096216 - 27096170
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||   ||||||||| |||||||||||||||||    
T  27096216 tgcaaaatcgcacaattggtaaaaagatagggggcaaaagtgcaatt 27096170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27182087 - 27182133
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||   ||||||||| |||||||||||||||||    
T  27182087 tgcaaaatcgcacaattggtaaaaagatagggggcaaaagtgcaatt 27182133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 9412080 - 9412024
Alignment:
Q  115 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  9412080 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 9412024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 10293781 - 10293609
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  10293781 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagat-gggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 10293683  T
Q  99 aatcgctc-nnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||||         |||| ||||||| || ||||||||||||||||||| | | ||||| | |||||||||    
T  10293682 aatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggggaaaaaaatgcaattaagc 10293609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 20968900 - 20969072
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  20968900 tgcaaaatcgcacaattagcaaaatgataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 20968999  T
Q  99 aatcgctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||||         | | ||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  20969000 aatcgctcaaaaaaaaaaaggggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 20969072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18875063 - 18874957
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  18875063 tgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 18874964  T
Q  99 aatcgct 105  Q
    |||||||    
T  18874963 aatcgct 18874957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 9026906 - 9026748
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||  |||||||    
T  9026906 tgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagacggggggcaaaatcagaaaggggg-aaaaagatggggtgcaa 9026808  T
Q  99 aatcgctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaa 159  Q
    ||||||||         ||| ||||||| ||||||||||| |||||||||| |||||||||    
T  9026807 aatcgctcaaaaaataaagg-ggtgcaaaattgcacaattaacaaaagataggaggaaaaa 9026748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3644724 - 3644795
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 72  Q
    |||||||||||||||||| ||| | ||||  |||||||||||||||| ||||||||||||||||||||||||    
T  3644724 tgcaaaatcgcacaattagcaagaggatagagggcaaaagtgcaattaaacacaaagatggggtgcaaaatc 3644795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1101094 - 1101148
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaa 56  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  1101094 tgcaaaatcgcacaattgacaaaaagat-aggggcaaaagtgcaattaaacacaaa 1101148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4947432 - 4947377
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaa 56  Q
    |||||||||||||||||  ||||||||||  |||||||||||||||||| ||||||    
T  4947432 tgcaaaatcgcacaattggcaaaaagatagagggcaaaagtgcaattgagcacaaa 4947377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 45060776 - 45060830
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaa 56  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||    
T  45060776 tgcaaaatcgaacaattggcaaaaagata-ggggcaaaagtgcaattgaacacaaa 45060830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13657625 - 13657679
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    |||||||||||||||||  |||||||||| ||| ||||||||||||| |||||||    
T  13657625 tgcaaaatcgcacaattggcaaaaagataggggacaaaagtgcaattaaacacaa 13657679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3644787 - 3644832
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    ||||||||||||||||||||||||| |||||||| |||| |||||||    
T  3644787 tgcaaaatcgcacaattaacaaaaa-ataagggggaaaaatgcaatt 3644832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10293913 - 10293958
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  10293913 tgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 10293958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17372477 - 17372531
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    |||||||||||||||||  |||||||||| || |||||||||| ||| |||||||    
T  17372477 tgcaaaatcgcacaattggcaaaaagatagggtgcaaaagtgccattaaacacaa 17372531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 47665965 - 47665912
Alignment:
Q  118 gaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||||| || ||||||||||||||  ||||| ||||||||| |||||||||    
T  47665965 gaggtgcaaaatcgcacaattgacaaactataaggggaaaaagtgcaattaagc 47665912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14015874 - 14015926
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagata-aggggcaaaagtgcaattgaaca 52  Q
    |||||||||||||||||  ||||||||||  ||||||||||||||||| ||||    
T  14015874 tgcaaaatcgcacaattggcaaaaagataggggggcaaaagtgcaattaaaca 14015926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17440929 - 17440877
Alignment:
Q  3 caaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    |||||||||||||||  |||||| ||| ||||||||| ||||||| |||||||    
T  17440929 caaaatcgcacaattggcaaaaatatatggggcaaaaatgcaattaaacacaa 17440877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18874932 - 18874885
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattga 49  Q
    |||||||||||||||||| ||||| |||| |||| ||||||||||||||    
T  18874932 tgcaaaatcgcacaattagcaaaa-gatagggggaaaaagtgcaattga 18874885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 25249 - 25356
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||    
T  25249 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaatggggcaaaaagatggggtgcaa 25348  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  25349 aatcgctc 25356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 45687 - 45794
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  45687 tgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 45786  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  45787 aatcgctc 45794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 11241570 - 11241662
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 93  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241570 tgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgaaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 11241662  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 16555697 - 16555804
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  16555697 tgcaaaatcgcacaattagcaaaaagataagggggaaaagtgcaattgaacacaaagatggggtgtaaaatcagaaagggggcaaaaagatggggtgcaa 16555796  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  16555797 aatcgctc 16555804  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 3930360 - 3930466
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  3930360 tgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattggacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 3930459  T
Q  99 aatcgct 105  Q
    |||||||    
T  3930460 aatcgct 3930466  T

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Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 13198778 - 13198671
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  13198778 tgcaaaatcgcacaattagaaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaagatggggtgcaa 13198679  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  13198678 aatcgctc 13198671  T

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Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5206139 - 5206244
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  5206139 tgcaaaatcgcacaattagcaaaaagatagggggaagaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatagggtgcaa 5206238  T
Q  99 aatcgc 104  Q
    ||||||    
T  5206239 aatcgc 5206244  T

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Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 22681753 - 22681662
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 93  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  22681753 tgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaattagaaa-ggggcaaaaagatgg 22681662  T

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Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 35393650 - 35393558
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 93  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  35393650 tgcaaaatcgcacaattagcaaaaagatagggggcaaaagttcaattgaacacaaagatagggtgcaaaatcaaaaagggggtaaaaagatgg 35393558  T

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Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27304897 - 27304984
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 88  Q
    |||||||||||||||||| |||||||||| |||| |||||||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  27304897 tgcaaaatcgcacaattagcaaaaagatagggggaaaaagtgcaattgaactcaaatatggggtgcaaaatcagaaaaggggcaaaaa 27304984  T

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Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 8488358 - 8488278
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggg 81  Q
    |||||||| ||||||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8488358 tgcaaaattgcacaattagcaaaaacatagggggcaaaagtgcaattgaacacaaagacggggtgcaaaatcagaaagggg 8488278  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 49178690 - 49178636
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  49178690 tgcaaaatcgcacaattggcaaaaagatagggggcaaaagtgcaattgaacacaa 49178636  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 24775690 - 24775633
Alignment:
Q  3 caaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatg 60  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||| ||||    
T  24775690 caaaatcgcacaattgacaaaaatatagggggcaaaagtgcaattaaacacaaggatg 24775633  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 16555565 - 16555520
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  16555565 tgcaaaatcgcacaattaac-aaaagataagggggaaaagtgcaatt 16555520  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5206234 - 5206278
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||    
T  5206234 tgcaaaatcgcacaattaa--aaaagataagggggaaaagtgcaatt 5206278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 22681881 - 22681932
Alignment:
Q  120 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||| ||||||||||| |||||||||| |||| |||||| |||||||||    
T  22681881 ggtgcaaaattgcacaattaacaaaagataggagggaaaagtgcaattaagc 22681932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 24775785 - 24775836
Alignment:
Q  120 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    ||||||| || ||||||||||||||||||| |||| |||||| |||||||||    
T  24775785 ggtgcaaaatcgcacaattgacaaaagataggagggaaaagtgcaattaagc 24775836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8182042 - 8181996
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||  ||||| |||| |||||||||||||||||    
T  8182042 tgcaaaatcgcacaattggcaaaacgatagggggcaaaagtgcaatt 8181996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11241439 - 11241394
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||||    
T  11241439 tgcaaaatcgcacaattaac-aaaagataaggaggaaaagtgcaatt 11241394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13198910 - 13198955
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  13198910 tgcaaaatcgcacaattaac-aaaagataggggggaaaagtgcaatt 13198955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16555821 - 16555866
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  16555821 tgcaaaatcgcacaattagcaaaa-gataagggggaaaagtgcaatt 16555866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 16555572 - 16555516
Alignment:
Q  115 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  16555572 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 16555516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 23433498 - 23433538
Alignment:
Q  131 gcacaattgacaaaagataagaggaaaaagttcaattaagc 171  Q
    |||||||||||||||||||||||| | |||| |||||||||    
T  23433498 gcacaattgacaaaagataagaggcagaagtgcaattaagc 23433538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 412090 - 411945
Alignment:
Q  6 aatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaaaatcg 103  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  412090 aatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatagggtgcaaaatcagaaagggggcaaaaagatagggtgcaaaatcg 411991  T
Q  104 ctcnnnnnnnngaggaggtgcaatattgcacaattgacaaaagata 149  Q
    ||         |||| ||||||| || |||||||||||||||||||    
T  411990 cttaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagata 411945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1221 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold1221
Description:

Target: scaffold1221; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 1655 - 1563
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 93  Q
    |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1655 tgcaaaatcgcacaattagcaaaaagataagagacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaataagatgg 1563  T

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Target: scaffold0598 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 6755 - 6847
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgg 93  Q
    |||||||||  | ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6755 tgcaaaatcatagaattagcaaaaaaataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggagcaaaaagatgg 6847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 439072 - 439001
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 72  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  439072 tgcaaaattgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 439001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 183544 - 183598
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaa 55  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||| |||||||    
T  183544 tgcaaaatcgcacaattggtaaaaagatagggggcaaaagtgcaattaaacacaa 183598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 439203 - 439248
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaatt 47  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  439203 tgcaaaatcgcacaattagcaaaa-gataaggggaaaaagtgcaatt 439248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 17027 - 16920
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagat--ggtgcaa 98  Q
    |||||||||| |||||||   |||||||| ||| |||||||||||||||||| ||||| || |||||||||||||||||| | ||||||||  |||||||    
T  17027 tgcaaaatcgtacaattagagaaaagataggggacaaaagtgcaattgaacaaaaagacggagtgcaaaatcagaaagggaggaaaaagatggggtgcaa 16928  T
Q  99 aatcgctc 106  Q
    ||||||||    
T  16927 aatcgctc 16920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 73137 - 73086
Alignment:
Q  1 tgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaaca 52  Q
    |||||||||||||| || ||||||||||| ||| ||||||||||||| ||||    
T  73137 tgcaaaatcgcacagttgacaaaaagataggggacaaaagtgcaattaaaca 73086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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