View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15825_low_19 (Length: 263)
Name: NF15825_low_19
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 7434608 - 7434837
Alignment:
| Q |
17 |
actttagaccattatacattacaaacaggctaaagaagctaattaaactaatgcctagtatatcctatcattcccccacaaactcagggtgactaaagac |
116 |
Q |
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| T |
7434608 |
actttagaccattatacattacaaacaggctaaagaagctaattaaactaatgcctggtatatcctatcattcccccacaaactcagggtgactaaagac |
7434707 |
T |
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| Q |
117 |
gaagttcaaacaaagggatattcgctttacactaaagacttccaaatataatctatatctacataaaattggaggtcattcagtagaggcaaaagatcat |
216 |
Q |
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| T |
7434708 |
gaagttcaaacaaagggatattcgctttacactaaagacttccaaatataatctatatctacataaaattggaggtcattcagtagaggcaaaagatcat |
7434807 |
T |
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| Q |
217 |
tcttacaagttacaatggaaatgcaaacca |
246 |
Q |
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| T |
7434808 |
tcttacaagttacaatggaaatgcaaacca |
7434837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 7523612 - 7523741
Alignment:
| Q |
119 |
agttcaaacaaagggatattcgctttacacta--aagacttccaaatataatctatatctacataaaattggaggtcattcagtagaggcaaaagatcat |
216 |
Q |
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|||||||||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7523612 |
agttcaaacagagggatattctcattacactataaagatttccaaatataatctatatctacataaaattagaggtcattcagtagaggcaaaagatcat |
7523711 |
T |
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| Q |
217 |
tcttacaagttacaatggaaatgcaaacca |
246 |
Q |
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| T |
7523712 |
tcttacaagttacaatggaaatgcaaacca |
7523741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 7523561 - 7523610
Alignment:
| Q |
17 |
actttagaccattatacattacaaacaggctaaagaagctaattaaacta |
66 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7523561 |
actttagaccattatacattacaaacaggcgaaagaagctaattaaacta |
7523610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 7521074 - 7521011
Alignment:
| Q |
183 |
aattggaggtcattcagtagaggcaaaagatcattcttacaagttacaatggaaatgcaaacca |
246 |
Q |
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| T |
7521074 |
aattgaaggtcgttcaggagaggcagaagatcaatcttacaagttacaatggaaatgcaaacca |
7521011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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