View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15825_low_20 (Length: 259)
Name: NF15825_low_20
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 5680450 - 5680358
Alignment:
| Q |
13 |
aatattgtgctctccaagttcaactagataaacctgtgagaaaatttcatcaaaagatgtttcacttgagactaagagttacaaataagagca |
105 |
Q |
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| T |
5680450 |
aatattgttctctccaagttcaactagataaacctgtgagaaaatttcatcaaaagatgtttcacttgagactaagagttacaaataagagca |
5680358 |
T |
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Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 5680292 - 5680222
Alignment:
| Q |
171 |
cctgattattattggtgcatgacaccaatggaagaaggaggaggaggaggaagagacatgttgtggaaatg |
241 |
Q |
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| T |
5680292 |
cctgattattattggtgcatgacaccaatggaagaaggagcaggaggaggaagagacatgttgtggaaatg |
5680222 |
T |
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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 5689761 - 5689719
Alignment:
| Q |
15 |
tattgtgctctccaagttcaactagataaacctgtgagaaaat |
57 |
Q |
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| T |
5689761 |
tattgtgctctccaaattccactagataaacctgtgagaaaat |
5689719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 5689642 - 5689598
Alignment:
| Q |
171 |
cctgattattattggtgcatgacaccaatggaagaaggaggagga |
215 |
Q |
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| T |
5689642 |
cctgattatttttggtgcatgagaccaatggaagaaggagaagga |
5689598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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