View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15825_low_24 (Length: 250)
Name: NF15825_low_24
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 35022627 - 35022387
Alignment:
| Q |
10 |
aaatgaaacccacattcaccaatcttttccatccagaagagaaatcaatcttatcatactttgtcgaaccattcggatacaaaatcccccaattccttcc |
109 |
Q |
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| T |
35022627 |
aaatgaaacccacattcaccaatcttttccatccagaagagaaatcaatcttatcatactttgtcgaaccattcggatacaaaatcccccaattccttcc |
35022528 |
T |
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| Q |
110 |
atttccagcaccttccttatcaaacaattcatacagataaacccctttcactccatctttcaacaatggcgttccggcaccggacttcaaatgcttcacc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35022527 |
atttccagcaccttccttatcaaacaattcatacagataaacccctttcactccatctttcaacaatggcgttccggcaccggacttcaaatgcttcacc |
35022428 |
T |
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| Q |
210 |
aatcccttcagataaatctctgcataagccgaattcgcatc |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35022427 |
aatcccttcagataaatctctgcataagccgaattcgcatc |
35022387 |
T |
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