View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15825_low_25 (Length: 244)
Name: NF15825_low_25
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 14876710 - 14876484
Alignment:
| Q |
1 |
ttctctatgtaatattacttgaacaatatattcttttttgaaattcaactaagtataattatttaaatgattattaagtaaccagtgtgtcttgtgctcc |
100 |
Q |
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| T |
14876710 |
ttctttatgtaatattacttgaacaatatattcttttttgaaattcaactaagtataattatttaaatgattattaagtaaccagtgcgtcttgtgctcc |
14876611 |
T |
|
| Q |
101 |
ttgtgtcaaccttattgttacaagtcccgctggttgactgacctccacctcatccaatgtctatatttgacatttatgattgcactgccatcctagaaag |
200 |
Q |
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| T |
14876610 |
ttgtgtcaaccttatggttacaagtcccgctggttgactgacctccacctcaaccaatgtctatatttgacatttatgattgcactgccatcctagaaag |
14876511 |
T |
|
| Q |
201 |
ctaccatgaaaaatttgtgtattggtt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
14876510 |
ctaccatgaaaaatttgtgtattggtt |
14876484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 14871644 - 14871418
Alignment:
| Q |
1 |
ttctctatgtaatattacttgaacaatatattcttttttgaaattcaactaagtataattatttaaatgattattaagtaaccagtgtgtcttgtgctcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
14871644 |
ttctctatgtaatattacttgaacaatatattcttttttgaaattcaactaagtataattatttaaatgattattaagtaatcagtgcgtcttgtgctcc |
14871545 |
T |
|
| Q |
101 |
ttgtgtcaaccttattgttacaagtcccgctggttgactgacctccacctcatccaatgtctatatttgacatttatgattgcactgccatcctagaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14871544 |
ttgtgtcaaccttattgttacaagtcccgctggttgactgaactccacctcaaccaatgtctatatttgatatttatgattgcactgccatcctagaaag |
14871445 |
T |
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| Q |
201 |
ctaccatgaaaaatttgtgtattggtt |
227 |
Q |
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||||||| ||||||||||||||||||| |
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| T |
14871444 |
ctaccataaaaaatttgtgtattggtt |
14871418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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