View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15825_low_26 (Length: 244)

Name: NF15825_low_26
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15825_low_26
NF15825_low_26
[»] chr8 (2 HSPs)
chr8 (18-244)||(44914854-44915080)
chr8 (18-229)||(7748579-7748796)
[»] chr5 (1 HSPs)
chr5 (18-244)||(2338488-2338714)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 44915080 - 44914854
Alignment:
Q  18 gtaataatgtatcctgccaattcatatccgatccttgaagagcgttaacatgcgagtctatttgctgcattgtatcaacacctgtggaagcagacctcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44915080 gtaataatgtatcctgccaattcatatccgatccttgaagagcgttaacatgcgagtctatttgctgcattgtatcaacacctgtggaagcagacctcat 44914981  T
Q  118 tctttttgcaatattcgataaagatgatgattctctgtctggattctctctttttacaagaagagtggcactcaggtttggattatccgcatatgaatac 217  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44914980 tctttttgcaatattcgataaagatggtgattctctatctggattctctctttttacaagaagagtggcactcaggtttggattatccgcatatgaatac 44914881  T
Q  218 atgacatcttgtacagcagaagcccca 244  Q
    |||||||||||||||||||||||||||    
T  44914880 atgacatcttgtacagcagaagcccca 44914854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 7748796 - 7748579
Alignment:
Q  18 gtaataatgtatcctgccaattcatatccgatccttgaagagcgttaacatgcgagtctatttg------ctgcattgtatcaacacctgtggaagcaga 111  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| ||| || ||| |||||||      |||||||| ||||||||||||||||||||     
T  7748796 gtaatagtgtattctgccaattcatatccgatccttgaagagcgtcaacgtgtgagcctatttgatgctgctgcattgcatcaacacctgtggaagcagg 7748697  T
Q  112 cctcattctttttgcaatattcgataaagatgatgattctctgtctggattctctctttttacaagaagagtggcactcaggtttggattatccgcatat 211  Q
    |||||||||||| |||||||| ||||||| |||||||| ||  || ||||||||||||||| || ||| || | |||||   || |||||||||||||||    
T  7748696 cctcattcttttcgcaatattagataaaggtgatgattgtccatccggattctctctttttgcatgaaaagagacactcgcattcggattatccgcatat 7748597  T
Q  212 gaatacatgacatcttgt 229  Q
    |||  | |||||||||||    
T  7748596 gaaatcgtgacatcttgt 7748579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 2338714 - 2338488
Alignment:
Q  18 gtaataatgtatcctgccaattcatatccgatccttgaagagcgttaacatgcgagtctatttgctgcattgtatcaacacctgtggaagcagacctcat 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  2338714 gtaataatctatcctgccaattcatatccgatccttgaagagcgtcaccatgtgagcctatttgctgcattgcatcaacccctgtggaagcagacctcat 2338615  T
Q  118 tctttttgcaatattcgataaagatgatgattctctgtctggattctctctttttacaagaagagtggcactcaggtttggattatccgcatatgaatac 217  Q
    ||||||||||||||||| ||||  |||||||| ||| |||||| |||||||||||||| |||||| | |||||   || ||||||||||| ||||||| |    
T  2338614 tctttttgcaatattcggtaaacgtgatgattgtctatctggactctctctttttacatgaagagagacactcgcattcggattatccgcgtatgaatgc 2338515  T
Q  218 atgacatcttgtacagcagaagcccca 244  Q
    ||| ||| |||||||||||||||||||    
T  2338514 atggcatattgtacagcagaagcccca 2338488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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