View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15825_low_28 (Length: 238)

Name: NF15825_low_28
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15825_low_28
NF15825_low_28
[»] chr2 (3 HSPs)
chr2 (18-153)||(28786111-28786246)
chr2 (39-150)||(28736559-28736670)
chr2 (39-92)||(28713343-28713396)
[»] chr8 (8 HSPs)
chr8 (36-130)||(1950459-1950553)
chr8 (36-130)||(2028440-2028534)
chr8 (39-109)||(2032979-2033049)
chr8 (39-130)||(2050220-2050311)
chr8 (36-130)||(10767615-10767709)
chr8 (36-109)||(2037031-2037104)
chr8 (36-109)||(2046408-2046481)
chr8 (36-130)||(2057180-2057274)
[»] chr4 (1 HSPs)
chr4 (67-150)||(48908700-48908783)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 28786246 - 28786111
Alignment:
Q  18 ccaatgaggccattttcatacaatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28786246 ccaatgaggccattttcatacaatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctc 28786147  T
Q  118 ctaaaccacaagacctgccactagtatgcaggttag 153  Q
    |||||||||||||| |||||||||||||||||||||    
T  28786146 ctaaaccacaagacttgccactagtatgcaggttag 28786111  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 28736670 - 28736559
Alignment:
Q  39 aatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaagacctgccac 138  Q
    ||||| |||||| || | ||||||||| ||||||| |||||||||||||||||| | |||  ||| || | |||||| || |||| | ||||  |||||     
T  28736670 aatagtaattttgatttgtatagttcaccagcacttaattggagggatacttttatatgtgactttgcacttaatgcccccaaactagaagatttgccag 28736571  T
Q  139 tagtatgcaggt 150  Q
    ||||||||||||    
T  28736570 tagtatgcaggt 28736559  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 28713396 - 28713343
Alignment:
Q  39 aatagcaattttaatctttatagttcatcagcactcaattggagggatactttt 92  Q
    |||||||||||| || | ||||| ||| ||||||| ||||||||||||||||||    
T  28713396 aatagcaattttgatttgtatagatcaccagcacttaattggagggatactttt 28713343  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 1950553 - 1950459
Alignment:
Q  36 tacaatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaaga 130  Q
    ||||| ||||||||| || | ||||| ||| |||||||||||||||||||||||| ||  |||| |||||||||| || |||| |||||||||||    
T  1950553 tacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtgcttgttacttggctcctgatactcccaaaccacaaga 1950459  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 2028440 - 2028534
Alignment:
Q  36 tacaatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaaga 130  Q
    ||||| ||||||||| || | ||||| ||| |||||||||||||||||||||||| |   ||||||||||||||| || |||| |||||| ||||    
T  2028440 tacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccagaaga 2028534  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 2032979 - 2033049
Alignment:
Q  39 aatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcc 109  Q
    ||||| |||||| || ||||||| ||| ||||||||||||||||||||| |||| |||||| |||||||||    
T  2032979 aatagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctcc 2033049  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 2050220 - 2050311
Alignment:
Q  39 aatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaaga 130  Q
    ||||| |||||| || ||||||| ||  | ||||||||||||||||||| ||||| ||||| |||||||||| || |||| |||||| ||||    
T  2050220 aatagtaattttgatatttatagctctccggcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaaga 2050311  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 10767615 - 10767709
Alignment:
Q  36 tacaatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaaga 130  Q
    |||||||| || ||| || ||||||| ||| ||||||| ||||||||||||||||||   |||| |||||||||| || |||| |||||| ||||    
T  10767615 tacaatagtaactttgatatttatagctcaccagcacttaattggagggatacttttacatgttacttggctcctgatactcccaaaccagaaga 10767709  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 2037031 - 2037104
Alignment:
Q  36 tacaatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcc 109  Q
    ||||||||||||| | || |||||||  || |||||||||||||||| ||||||||||  |||| |||||||||    
T  2037031 tacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttgcttgttacttggctcc 2037104  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 2046408 - 2046481
Alignment:
Q  36 tacaatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcc 109  Q
    ||||||||||||| | || |||||||  || |||||||||||||||| ||||||||||  |||| |||||||||    
T  2046408 tacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttgcttgttacttggctcc 2046481  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 2057180 - 2057274
Alignment:
Q  36 tacaatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaaga 130  Q
    |||||||||||| || || ||||||| ||  | ||||||||||||||||||| ||||   |||| |||||||||| || |||| |||||| ||||    
T  2057180 tacaatagcaatgttgatatttatagctctccggcactcaattggagggatagttttagttgttacttggctcctgatactccaaaaccagaaga 2057274  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 48908783 - 48908700
Alignment:
Q  67 cagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaagacctgccactagtatgcaggt 150  Q
    |||| ||||||||||||||||||||| | |||| |||||||||| || |||| |||||| ||||  | || |||||||||||||    
T  48908783 cagcgctcaattggagggatacttttatttgtttcttggctcctgatactcccaaaccagaagattttcctctagtatgcaggt 48908700  T

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