View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15825_low_6 (Length: 436)
Name: NF15825_low_6
Description: NF15825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15825_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 248 - 418
Target Start/End: Original strand, 41953839 - 41954009
Alignment:
| Q |
248 |
acagtaatacatagcttcattccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaat |
347 |
Q |
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| T |
41953839 |
acagtaaaacatagcttcattccataaaacacataacattacaaagggctaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaat |
41953938 |
T |
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| Q |
348 |
tttagagaggtggtctactaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggacttat |
418 |
Q |
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| T |
41953939 |
tttagagaggtggtctactaaatcatgatgtaaattacacatactatttgcagagaaatgtgaggacttat |
41954009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 41953616 - 41953828
Alignment:
| Q |
13 |
cagagaaaaataagtaaaacggtnnnnnnnntcccctaaaaatcgaatttgagtattattggaacaatttgagttaaacgtaactcattaggtacttgaa |
112 |
Q |
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| T |
41953616 |
cagagaaaaataagtaaaacggtaaaaaaattcccctaaaaatcgaatttgagtattattggaacaatttgagttaaacgtaactcattaggtacttgaa |
41953715 |
T |
|
| Q |
113 |
cttaatctacgagagagaacacaattagtctatg-nnnnnnnnngcaaattttggattggaatctcaacactttagagttgactttatagaataaggttc |
211 |
Q |
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| T |
41953716 |
cttaatctacgagagagaacacaattagtctatgaaaaaaaaaagcaaattttggattggaatctcaacactttagagttgactttatagaataaggttc |
41953815 |
T |
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| Q |
212 |
aacagttccaacc |
224 |
Q |
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| T |
41953816 |
aacagttccaacc |
41953828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 251 - 417
Target Start/End: Complemental strand, 35707624 - 35707461
Alignment:
| Q |
251 |
gtaatacatagcttcattccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaatttt |
350 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| || ||||||| |||||||||||| | |
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| T |
35707624 |
gtaaaacatagcttcattccataaaacacataacattacaaagggctaatattaatattgaaaggg---cattctccaacaatttcaaagagtaaattct |
35707528 |
T |
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| Q |
351 |
agagaggtggtctactaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggactta |
417 |
Q |
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| T |
35707527 |
agagaggtggtctactaaatcatgatgtaaatcacacatattgtttgcagagaaatgtaaggactta |
35707461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 34221938 - 34222107
Alignment:
| Q |
248 |
acagtaatacatagcttcat---tccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagta |
344 |
Q |
| |
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||||||| |||||||||||| ||||||||||||| |||||||||||| | ||||||||| |||||| ||| |||||||| ||||||| |||||||| |
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| T |
34221938 |
acagtaaaacatagcttcatcattccataaaacacaaaacattacaaagagctaatgttaacattgaagggg---cattccccaacaattttaaagagta |
34222034 |
T |
|
| Q |
345 |
aattttagagaggtggtctactaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggactta |
417 |
Q |
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|||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||| || |||||||||| |
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| T |
34222035 |
aattctagagaggtagtctactaaatcaagatgtaaattacacataaattttgcagagagatatgaggactta |
34222107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 417
Target Start/End: Complemental strand, 3340614 - 3340464
Alignment:
| Q |
264 |
tcattccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaattttagagaggtggtct |
363 |
Q |
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|||||||||||||||| |||| ||||||||| ||||||||| |||||| ||| |||| ||| ||||||| |||||||||||| ||||||||| |||| |
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| T |
3340614 |
tcattccataaaacactaaacaatacaaagggctaatgttaacattgaagggg---catttcccaacaattttaaagagtaaattctagagaggtagtct |
3340518 |
T |
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| Q |
364 |
actaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggactta |
417 |
Q |
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||||||||| ||||||||||||| ||| |||||||||| ||||||||||||| |
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| T |
3340517 |
actaaatcaagatgtaaattacaaataaattttgcagagagatgtgaggactta |
3340464 |
T |
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