View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15826_low_1 (Length: 492)
Name: NF15826_low_1
Description: NF15826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15826_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 12 - 485
Target Start/End: Original strand, 39679436 - 39679909
Alignment:
| Q |
12 |
gaacctgtgcaacaagcaaaacaagaagcatcaagaaggaaaaagatgtcaagagcacaagattcagtactcaaatacatggcaaagatcatggatgtat |
111 |
Q |
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| T |
39679436 |
gaacctgagcaacaagcaaaacaagaagcatcaagaaggaaaaagatgtcaagagcacaagattcagtactcaaatacatggcaaagatcatggatgtat |
39679535 |
T |
|
| Q |
112 |
gcaaagccaaaggttttgtctatggaatcatccctgaaaagggtaaaccggtatcaggttcgtctgatagtttacgcgaatggtggaaagatcaaatccg |
211 |
Q |
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| T |
39679536 |
gcaaagccaaaggttttgtctatggaatcatccctgaaaagggtaaaccggtatcaggttcgtctgatagtttacgcgaatggtggaaagatcaaatccg |
39679635 |
T |
|
| Q |
212 |
ttttgatcaaagtgcgccactcgcggttgcaaaatacttaccactccttcgagaagacgaacattttaatactataatggctgacccaaattcttacata |
311 |
Q |
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| T |
39679636 |
ttttgatcaaagcgcgccactcgcggttgcaaaatacttaccactccttcgagaagacgaacattttaatactataatggctgacccaaattcttacata |
39679735 |
T |
|
| Q |
312 |
catctcctccaagatttacaagattcaactcttggttcgcttctttctgctttaatgcaacattgtgtgccaccacagaggaggtttccactcgagaggg |
411 |
Q |
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| T |
39679736 |
catctcctccaagatttacaagattcaactcttggttcgcttctttctgctttaatgcaacattgtgtgccaccacagaggaggtttccactcgagaggg |
39679835 |
T |
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| Q |
412 |
gaatttctcctccctggtggcccacaggatcagaaaattggtggggtgaacaaggattgttggcccaagaacaa |
485 |
Q |
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| T |
39679836 |
gaatttctcctccctggtggcccacaggatcagaaaattggtggggtgaacaaggtttgttggcccaagaacaa |
39679909 |
T |
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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 38051988 - 38052169
Alignment:
| Q |
21 |
caacaagcaaaacaagaagcatcaagaaggaaaaagatgtcaagagcacaagattcagtactcaaatacatggcaaagatcatggatgtatgcaaagcca |
120 |
Q |
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|||||||||||| | || ||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||| |||||||||| |
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| T |
38051988 |
caacaagcaaaagatgaggcatcaagaaggaaaaagatgtcaagagcacaagattcaattctcaaatacatgatgaagattatgacaatatgcaaagctc |
38052087 |
T |
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| Q |
121 |
aaggttttgtctatggaatcatccctgaaaagggtaaaccggtatcaggttcgtctgatagtttacgcgaatggtggaaaga |
202 |
Q |
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| T |
38052088 |
aaggttttgtctatggtattgttccagagaaaggaaaaccagtaacaggttcttcagaaagcttgcgtgaatggtggaaaga |
38052169 |
T |
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